Information for 11-CTGAAAAGCCTGW (Motif 13)

A G T C A C G T A C T G G T C A C G T A C T G A C T G A A C T G G T A C A G T C A C G T A T C G C G A T
Reverse Opposite:
C G T A A T G C C G T A A C T G A C T G A G T C A G C T A G C T A C G T A C G T G T A C C G T A C T A G
p-value:1e-11
log p-value:-2.707e+01
Information Content per bp:1.811
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.77%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets37.3 +/- 26.4bp
Average Position of motif in Background49.5 +/- 26.2bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.56
Offset:5
Orientation:forward strand
Alignment:CTGAAAAGCCTGW
-----AGGCCTNG
 A G T C A C G T A C T G G T C A C G T A C T G A C T G A A C T G G T A C A G T C A C G T A T C G C G A T
A C G T A C G T A C G T A C G T A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:2
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CTGAAAAGCCTGW--
VAGRACAKNCTGTBC
 A G T C A C G T A C T G G T C A C G T A C T G A C T G A A C T G G T A C A G T C A C G T A T C G C G A T A C G T A C G T
T G A C C T G A C T A G T C G A C T G A A T G C C G T A A C T G G C A T G T A C G C A T A T C G G C A T A G C T G A T C

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.52
Offset:8
Orientation:forward strand
Alignment:CTGAAAAGCCTGW-
--------GCTGTG
 A G T C A C G T A C T G G T C A C G T A C T G A C T G A A C T G G T A C A G T C A C G T A T C G C G A T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G

Nr2e3/MA0164.1/Jaspar

Match Rank:4
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:CTGAAAAGCCTGW
-----AAGCTTG-
 A G T C A C G T A C T G G T C A C G T A C T G A C T G A A C T G G T A C A G T C A C G T A T C G C G A T
A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G A T G C A C G T A C G T C T A G A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:5
Score:0.51
Offset:5
Orientation:forward strand
Alignment:CTGAAAAGCCTGW
-----AGGCCTAG
 A G T C A C G T A C T G G T C A C G T A C T G A C T G A A C T G G T A C A G T C A C G T A T C G C G A T
A C G T A C G T A C G T A C G T A C G T T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G

Bcl6/MA0463.1/Jaspar

Match Rank:6
Score:0.51
Offset:-4
Orientation:forward strand
Alignment:----CTGAAAAGCCTGW
TTTCCTAGAAAGCA---
 A C G T A C G T A C G T A C G T A G T C A C G T A C T G G T C A C G T A C T G A C T G A A C T G G T A C A G T C A C G T A T C G C G A T
C A G T C G A T A G C T G T A C A G T C A C G T T C G A C T A G C T G A T C G A C T G A C A T G G T A C G C T A A C G T A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:7
Score:0.50
Offset:0
Orientation:forward strand
Alignment:CTGAAAAGCCTGW
BTBRAGTGSN---
 A G T C A C G T A C T G G T C A C G T A C T G A C T G A A C T G G T A C A G T C A C G T A T C G C G A T
A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C A C G T A C G T A C G T

PB0022.1_Gata5_1/Jaspar

Match Rank:8
Score:0.49
Offset:-4
Orientation:forward strand
Alignment:----CTGAAAAGCCTGW
TAAACTGATAAGAAGAT
 A C G T A C G T A C G T A C G T A G T C A C G T A C T G G T C A C G T A C T G A C T G A A C T G G T A C A G T C A C G T A T C G C G A T
G C A T C G T A C G T A C T G A A G T C G C A T A C T G C G T A C G A T G C T A C G T A T A C G T C G A T C G A C A T G C G T A C A G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:9
Score:0.48
Offset:0
Orientation:reverse strand
Alignment:CTGAAAAGCCTGW
CTYRAGTGSY---
 A G T C A C G T A C T G G T C A C G T A C T G A C T G A A C T G G T A C A G T C A C G T A T C G C G A T
A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C A C G T A C G T A C G T

NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:10
Score:0.48
Offset:-2
Orientation:forward strand
Alignment:--CTGAAAAGCCTGW-----
NANTGGAAAAANTGAGTCAN
 A C G T A C G T A G T C A C G T A C T G G T C A C G T A C T G A C T G A A C T G G T A C A G T C A C G T A T C G C G A T A C G T A C G T A C G T A C G T A C G T
T A C G C T G A T C G A C G A T C T A G C T A G T C G A C T G A T C G A T C G A C G T A T C G A G C A T C A T G C G T A T A C G G C A T T G A C C G T A A G C T