Information for 15-CKCTAAGGGA (Motif 21)

A G T C A C T G A G T C A C G T C G T A C G T A A C T G A C T G A C T G C G T A
Reverse Opposite:
A C G T A G T C G T A C A G T C A C G T A C G T C G T A A C T G G T A C C T A G
p-value:1e-5
log p-value:-1.183e+01
Information Content per bp:1.906
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif24.9
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets51.6 +/- 26.6bp
Average Position of motif in Background54.4 +/- 25.8bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:1
Score:0.74
Offset:2
Orientation:forward strand
Alignment:CKCTAAGGGA
--CTAATKGV
 A G T C A C T G A G T C A C G T C G T A C G T A A C T G A C T G A C T G C G T A
A C G T A C G T A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C

NKX3-2/MA0122.2/Jaspar

Match Rank:2
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CKCTAAGGGA-
--TTAAGTGGN
 A G T C A C T G A G T C A C G T C G T A C G T A A C T G A C T G A C T G C G T A A C G T
A C G T A C G T G A C T C G A T C T G A T C G A C A T G C G A T C T A G A T C G A G C T

Nkx3-1/MA0124.2/Jaspar

Match Rank:3
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CKCTAAGGGA-
--TTAAGTGGT
 A G T C A C T G A G T C A C G T C G T A C G T A A C T G A C T G A C T G C G T A A C G T
A C G T A C G T G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T

Barhl1/MA0877.1/Jaspar

Match Rank:4
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CKCTAAGGGA-
-GCTAATTGCT
 A G T C A C T G A G T C A C G T C G T A C G T A A C T G A C T G A C T G C G T A A C G T
A C G T A T C G G A T C G C A T C G T A C T G A C G A T A G C T C T A G A T G C A G C T

ISL2/MA0914.1/Jaspar

Match Rank:5
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CKCTAAGGGA
--TTAAGTGC
 A G T C A C T G A G T C A C G T C G T A C G T A A C T G A C T G A C T G C G T A
A C G T A C G T G A C T C G A T C T G A G C T A C A T G C G A T C T A G A T G C

HLTF/MA0109.1/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CKCTAAGGGA
NNATAAGGNN
 A G T C A C T G A G T C A C G T C G T A C G T A A C T G A C T G A C T G C G T A
C G T A A C G T G T C A G C A T C G T A C G T A A C T G A C T G C G A T G C A T

PH0004.1_Nkx3-2/Jaspar

Match Rank:7
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CKCTAAGGGA-----
NTNNTTAAGTGGTTANN
 A C G T A C G T A G T C A C T G A G T C A C G T C G T A C G T A A C T G A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T
C T A G C A G T A C G T A T C G G C A T C G A T C T G A C T G A A C T G C G A T C T A G A T C G C G A T A G C T C G T A C G A T A C T G

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CKCTAAGGGA-----
NTNNTTAAGTGGNTNAN
 A C G T A C G T A G T C A C T G A G T C A C G T C G T A C G T A A C T G A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T
T C G A A G C T A G T C A T G C G C A T C G A T C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G T A C A T G

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:9
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CKCTAAGGGA--
--NTAATKGTTT
 A G T C A C T G A G T C A C G T C G T A C G T A A C T G A C T G A C T G C G T A A C G T A C G T
A C G T A C G T A G T C G C A T T C G A T C G A C A G T C A T G T A C G G A C T G A C T A G C T

NKX2-3/MA0672.1/Jaspar

Match Rank:10
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CKCTAAGGGA-
-NTCAAGTGGN
 A G T C A C T G A G T C A C G T C G T A C G T A A C T G A C T G A C T G C G T A A C G T
A C G T A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T