Information for 2-RRTCACGTGD (Motif 2)

C T A G T C A G A G C T A G T C C G T A A G T C C T A G A C G T A C T G C T A G
Reverse Opposite:
G A T C A G T C C G T A A G T C A C T G A C G T A C T G T C G A A G T C G A T C
p-value:1e-68
log p-value:-1.571e+02
Information Content per bp:1.762
Number of Target Sequences with motif79.0
Percentage of Target Sequences with motif9.04%
Number of Background Sequences with motif247.0
Percentage of Background Sequences with motif0.52%
Average Position of motif in Targets50.2 +/- 18.7bp
Average Position of motif in Background48.7 +/- 34.9bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.98
Offset:0
Orientation:forward strand
Alignment:RRTCACGTGD
GGTCACGTGA
 C T A G T C A G A G C T A G T C C G T A A G T C C T A G A C G T A C T G C T A G
T A C G T C A G A G C T A T G C C G T A A G T C T C A G A C G T A C T G T C G A

Arntl/MA0603.1/Jaspar

Match Rank:2
Score:0.98
Offset:0
Orientation:forward strand
Alignment:RRTCACGTGD
GGTCACGTGC
 C T A G T C A G A G C T A G T C C G T A A G T C C T A G A C G T A C T G C T A G
C A T G T C A G C A G T G T A C G C T A A G T C C T A G G A C T C A T G G A T C

TFE3/MA0831.1/Jaspar

Match Rank:3
Score:0.97
Offset:1
Orientation:reverse strand
Alignment:RRTCACGTGD-
-GTCACGTGNT
 C T A G T C A G A G C T A G T C C G T A A G T C C T A G A C G T A C T G C T A G A C G T
A C G T C T A G A C G T T G A C C G T A A G T C T C A G C G A T A T C G T C G A A G C T

CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:4
Score:0.96
Offset:1
Orientation:forward strand
Alignment:RRTCACGTGD
-GHCACGTG-
 C T A G T C A G A G C T A G T C C G T A A G T C C T A G A C G T A C T G C T A G
A C G T C T A G G C A T G A T C C G T A A G T C T C A G G A C T C T A G A C G T

Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer

Match Rank:5
Score:0.96
Offset:1
Orientation:forward strand
Alignment:RRTCACGTGD-
-GTCACGTGGT
 C T A G T C A G A G C T A G T C C G T A A G T C C T A G A C G T A C T G C T A G A C G T
A C G T T C A G A C G T A G T C T C G A A G T C T C A G G C A T C T A G C T A G A G C T

MLXIPL/MA0664.1/Jaspar

Match Rank:6
Score:0.96
Offset:1
Orientation:forward strand
Alignment:RRTCACGTGD-
-ATCACGTGAT
 C T A G T C A G A G C T A G T C C G T A A G T C C T A G A C G T A C T G C T A G A C G T
A C G T C T G A C A G T A T G C C G T A T A G C T C A G A C G T A C T G G C T A G A C T

TFEB/MA0692.1/Jaspar

Match Rank:7
Score:0.96
Offset:1
Orientation:reverse strand
Alignment:RRTCACGTGD-
-GTCACGTGAT
 C T A G T C A G A G C T A G T C C G T A A G T C C T A G A C G T A C T G C T A G A C G T
A C G T T C A G A C G T T G A C C G T A A G T C T C A G C A G T C A T G T C G A A G C T

BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer

Match Rank:8
Score:0.96
Offset:1
Orientation:forward strand
Alignment:RRTCACGTGD
-GNCACGTG-
 C T A G T C A G A G C T A G T C C G T A A G T C C T A G A C G T A C T G C T A G
A C G T C T A G C A G T T G A C C G T A G A T C T C A G G A C T C A T G A C G T

BHLHE40/MA0464.2/Jaspar

Match Rank:9
Score:0.95
Offset:1
Orientation:reverse strand
Alignment:RRTCACGTGD-
-GTCACGTGAN
 C T A G T C A G A G C T A G T C C G T A A G T C C T A G A C G T A C T G C T A G A C G T
A C G T C T A G C A G T T G A C C T G A A G T C C T A G A C G T C A T G G T C A A C G T

bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:RRTCACGTGD
NGKCACGTGM
 C T A G T C A G A G C T A G T C C G T A A G T C C T A G A C G T A C T G C T A G
T C G A T C A G C A T G A G T C C G T A A G T C C T A G A C G T A C T G G T A C