Information for 10-TGGCAGCAGA (Motif 11)

A C G T A C T G A C T G G T A C C G T A A C T G G T A C C T G A C T A G G T C A
Reverse Opposite:
A C G T A G T C A G C T A C T G A G T C A C G T A C T G G T A C A G T C G T C A
p-value:1e-10
log p-value:-2.410e+01
Information Content per bp:1.858
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif2.52%
Number of Background Sequences with motif192.3
Percentage of Background Sequences with motif0.41%
Average Position of motif in Targets51.5 +/- 33.1bp
Average Position of motif in Background48.9 +/- 28.5bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--TGGCAGCAGA
CTTGGCAA----
 A C G T A C G T A C G T A C T G A C T G G T A C C G T A A C T G G T A C C T G A C T A G G T C A
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T

NRL/MA0842.1/Jaspar

Match Rank:2
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:TGGCAGCAGA--
-GTCAGCANNTN
 A C G T A C T G A C T G G T A C C G T A A C T G G T A C C T G A C T A G G T C A A C G T A C G T
A C G T T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:3
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--TGGCAGCAGA
VBTGWCAGCB--
 A C G T A C G T A C G T A C T G A C T G G T A C C G T A A C T G G T A C C T G A C T A G G T C A
T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:4
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TGGCAGCAGA
TTGACAGC---
 A C G T A C G T A C T G A C T G G T A C C G T A A C T G G T A C C T G A C T A G G T C A
C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TGGCAGCAGA
TTGGCA-----
 A C G T A C G T A C T G A C T G G T A C C G T A A C T G G T A C C T G A C T A G G T C A
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:6
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--TGGCAGCAGA
NTTGGCANN---
 A C G T A C G T A C G T A C T G A C T G G T A C C G T A A C T G G T A C C T G A C T A G G T C A
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:7
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TGGCAGCAGA
TGAGTCAGCA--
 A C G T A C G T A C G T A C T G A C T G G T A C C G T A A C T G G T A C C T G A C T A G G T C A
G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:8
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---TGGCAGCAGA
NNTTGGCANN---
 A C G T A C G T A C G T A C G T A C T G A C T G G T A C C G T A A C T G G T A C C T G A C T A G G T C A
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T

PH0169.1_Tgif1/Jaspar

Match Rank:9
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----TGGCAGCAGA--
GATATTGACAGCTGCGT
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G G T A C C G T A A C T G G T A C C T G A C T A G G T C A A C G T A C G T
C A G T C T G A A C G T C G T A C G A T C G A T A C T G C G T A A G T C C T G A C T A G A T G C A C G T T A C G T A G C A C T G C G A T

PB0041.1_Mafb_1/Jaspar

Match Rank:10
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----TGGCAGCAGA---
NCTANGTCAGCAAATTT
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G G T A C C G T A A C T G G T A C C T G A C T A G G T C A A C G T A C G T A C G T
C A G T G A T C A G C T C G T A G C T A T C A G A C G T G T A C C G T A C A T G G A T C C G T A G T C A C G T A G C A T G A C T C G A T