Information for 6-AAGCTGGGTTATGACT (Motif 7)

C T G A C T G A A C T G A G T C A C G T C A T G A C T G T C A G A C G T C G A T C T G A C G A T A T C G G T C A A T G C A G C T
Reverse Opposite:
C T G A A T C G A C G T A T G C G C T A G A C T C G T A C G T A A G T C G T A C G T A C G T C A C T A G G T A C A G C T A G C T
p-value:1e-16
log p-value:-3.764e+01
Information Content per bp:1.713
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.98%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets43.6 +/- 20.2bp
Average Position of motif in Background70.4 +/- 3.3bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0120.1_Foxj1_2/Jaspar

Match Rank:1
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:AAGCTGGGTTATGACT-
--GTNTTGTTGTGANNT
 C T G A C T G A A C T G A G T C A C G T C A T G A C T G T C A G A C G T C G A T C T G A C G A T A T C G G T C A A T G C A G C T A C G T
A C G T A C G T C A T G A G C T T A C G G A C T G C A T A C T G A C G T G A C T C T A G A G C T A C T G T G C A A G T C T C G A C G A T

Nr2e3/MA0164.1/Jaspar

Match Rank:2
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:AAGCTGGGTTATGACT
AAGCTTG---------
 C T G A C T G A A C T G A G T C A C G T C A T G A C T G T C A G A C G T C G A T C T G A C G A T A T C G G T C A A T G C A G C T
C G T A C G T A A C T G A T G C A C G T A C G T C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0121.1_Foxj3_2/Jaspar

Match Rank:3
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:AAGCTGGGTTATGACT--
-NNCTTTGTTTTGNTNNN
 C T G A C T G A A C T G A G T C A C G T C A T G A C T G T C A G A C G T C G A T C T G A C G A T A T C G G T C A A T G C A G C T A C G T A C G T
A C G T G C A T A T G C G T A C C G A T G C A T C G A T C T A G C G A T C A G T C G A T A C G T C T A G C A T G G A C T T A C G G C A T A C G T

PB0123.1_Foxl1_2/Jaspar

Match Rank:4
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:AAGCTGGGTTATGACT-
-NNTTTTGTTTTGATNT
 C T G A C T G A A C T G A G T C A C G T C A T G A C T G T C A G A C G T C G A T C T G A C G A T A T C G G T C A A T G C A G C T A C G T
A C G T C A G T C A T G G A C T C A G T G C A T G C A T T C A G A C G T C A G T C G A T C A G T C T A G G C T A G C A T G C T A C G A T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:5
Score:0.50
Offset:5
Orientation:reverse strand
Alignment:AAGCTGGGTTATGACT
-----NTTTTATGAC-
 C T G A C T G A A C T G A G T C A C G T C A T G A C T G T C A G A C G T C G A T C T G A C G A T A T C G G T C A A T G C A G C T
A C G T A C G T A C G T A C G T A C G T C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T

PH0047.1_Hoxa11/Jaspar

Match Rank:6
Score:0.49
Offset:3
Orientation:reverse strand
Alignment:AAGCTGGGTTATGACT---
---NNGTTTTACGACTTTA
 C T G A C T G A A C T G A G T C A C G T C A T G A C T G T C A G A C G T C G A T C T G A C G A T A T C G G T C A A T G C A G C T A C G T A C G T A C G T
A C G T A C G T A C G T G T C A G A C T C T A G C G A T C A G T C G A T C G A T C G T A A G T C C A T G C T G A A G T C G A C T C G A T G A C T C G T A

PH0066.1_Hoxc11/Jaspar

Match Rank:7
Score:0.49
Offset:3
Orientation:reverse strand
Alignment:AAGCTGGGTTATGACT---
---NNNTTTTACGACNTTN
 C T G A C T G A A C T G A G T C A C G T C A T G A C T G T C A G A C G T C G A T C T G A C G A T A T C G G T C A A T G C A G C T A C G T A C G T A C G T
A C G T A C G T A C G T G T A C G A C T C T G A C G A T C G A T C G A T C G A T C G T A A G T C C A T G C T G A A G T C G A C T C G A T G A C T C T G A

PB0176.1_Sox5_2/Jaspar

Match Rank:8
Score:0.49
Offset:1
Orientation:reverse strand
Alignment:AAGCTGGGTTATGACT
-NNCTNAATTATGANN
 C T G A C T G A A C T G A G T C A C G T C A T G A C T G T C A G A C G T C G A T C T G A C G A T A T C G G T C A A T G C A G C T
A C G T G A C T G A T C A T G C A C G T G C A T C T G A C G T A C G A T A C G T G T C A G A C T T C A G G C T A C G A T G C T A

PB0141.1_Isgf3g_2/Jaspar

Match Rank:9
Score:0.48
Offset:0
Orientation:reverse strand
Alignment:AAGCTGGGTTATGACT
NNGTANTGTTTTNC--
 C T G A C T G A A C T G A G T C A C G T C A T G A C T G T C A G A C G T C G A T C T G A C G A T A T C G G T C A A T G C A G C T
G A C T C T G A C A T G C G A T G T C A T G C A G C A T A T C G G A C T G C A T G C A T G C A T A T C G T G A C A C G T A C G T

CDX2/MA0465.1/Jaspar

Match Rank:10
Score:0.48
Offset:6
Orientation:reverse strand
Alignment:AAGCTGGGTTATGACT-
------TTTTATGGCTN
 C T G A C T G A A C T G A G T C A C G T C A T G A C T G T C A G A C G T C G A T C T G A C G A T A T C G G T C A A T G C A G C T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T