Information for 6-CAGGTTTCAT (Motif 8)

T A G C C G T A T A C G T C A G A C G T G C A T A G C T A G T C C G T A C G A T
Reverse Opposite:
C G T A C G A T A C T G C T G A C G T A G T C A A G T C A T G C C G A T A T C G
p-value:1e-9
log p-value:-2.213e+01
Information Content per bp:1.827
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.86%
Number of Background Sequences with motif106.5
Percentage of Background Sequences with motif0.22%
Average Position of motif in Targets41.8 +/- 31.8bp
Average Position of motif in Background49.0 +/- 30.0bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:CAGGTTTCAT-
-TGGTTTCAGT
 T A G C C G T A T A C G T C A G A C G T G C A T A G C T A G T C C G T A C G A T A C G T
A C G T G A C T C T A G T A C G C G A T G C A T A C G T T A G C T C G A A T C G C G A T

PH0164.1_Six4/Jaspar

Match Rank:2
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---CAGGTTTCAT----
TNNNNGGTGTCATNTNT
 A C G T A C G T A C G T T A G C C G T A T A C G T C A G A C G T G C A T A G C T A G T C C G T A C G A T A C G T A C G T A C G T A C G T
A G C T T C A G T C G A C A G T C T G A T C A G A C T G A C G T C T A G A C G T G T A C C T G A C G A T C A G T G A C T G T C A C A G T

PKNOX2/MA0783.1/Jaspar

Match Rank:3
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---CAGGTTTCAT
TGACAGGTGTCA-
 A C G T A C G T A C G T T A G C C G T A T A C G T C A G A C G T G C A T A G C T A G T C C G T A C G A T
C G A T T A C G C T G A A G T C C G T A C A T G T A C G A G C T T C A G G A C T T G A C C T G A A C G T

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:4
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----CAGGTTTCAT
GKVTCADRTTWC--
 A C G T A C G T A C G T A C G T T A G C C G T A T A C G T C A G A C G T G C A T A G C T A G T C C G T A C G A T
C T A G C A T G T G C A A C G T A G T C C G T A C A T G T C A G A C G T A C G T G C T A A G T C A C G T A C G T

PKNOX1/MA0782.1/Jaspar

Match Rank:5
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CAGGTTTCAT
TGACAGGTGTCA-
 A C G T A C G T A C G T T A G C C G T A T A C G T C A G A C G T G C A T A G C T A G T C C G T A C G A T
G A C T T A C G C T G A G T A C C T G A C A T G T A C G A G C T T C A G G C A T T A G C C G T A A C G T

TGIF2/MA0797.1/Jaspar

Match Rank:6
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CAGGTTTCAT
TGACAGCTGTCA-
 A C G T A C G T A C G T T A G C C G T A T A C G T C A G A C G T G C A T A G C T A G T C C G T A C G A T
G C A T C T A G C T G A G A T C C T G A C A T G T A G C G A C T C T A G G A C T A T G C C G T A A C G T

PH0161.1_Six1/Jaspar

Match Rank:7
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CAGGTTTCAT----
GATGGGGTATCATTTTT
 A C G T A C G T A C G T T A G C C G T A T A C G T C A G A C G T G C A T A G C T A G T C C G T A C G A T A C G T A C G T A C G T A C G T
C T A G G C T A C A G T T C A G C T A G A T C G T C A G A C G T C T G A A C G T G A T C C T G A G A C T C A G T G C A T A C G T C A G T

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:8
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CAGGTTTCAT
-AGGTGTCA-
 T A G C C G T A T A C G T C A G A C G T G C A T A G C T A G T C C G T A C G A T
A C G T C T G A C T A G A T C G A G C T A C T G G A C T A G T C C T G A A C G T

Arid3a/MA0151.1/Jaspar

Match Rank:9
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:CAGGTTTCAT
----TTTAAT
 T A G C C G T A T A C G T C A G A C G T G C A T A G C T A G T C C G T A C G A T
A C G T A C G T A C G T A C G T G C A T A C G T A C G T C T G A C G T A A C G T

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:10
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----CAGGTTTCAT
GKMTCADRTTWC--
 A C G T A C G T A C G T A C G T T A G C C G T A T A C G T C A G A C G T G C A T A G C T A G T C C G T A C G A T
C T A G C A G T T G C A A C G T G A T C T C G A C T A G T C A G A C G T C A G T G C A T G A T C A C G T A C G T