Information for 5-AGCAATGGCA (Motif 6)

C G T A A T C G A G T C G C T A C G T A A G C T A C T G A T C G G T A C C G T A
Reverse Opposite:
A C G T A C T G A T G C G T A C C T G A A C G T C G A T C T A G A T G C A C G T
p-value:1e-9
log p-value:-2.295e+01
Information Content per bp:1.825
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.74%
Number of Background Sequences with motif85.8
Percentage of Background Sequences with motif0.18%
Average Position of motif in Targets41.7 +/- 17.3bp
Average Position of motif in Background48.7 +/- 27.6bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX9/MA0077.1/Jaspar

Match Rank:1
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-AGCAATGGCA
GAACAATGG--
 A C G T C G T A A T C G A G T C G C T A C G T A A G C T A C T G A T C G G T A C C G T A
C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:2
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--AGCAATGGCA
VRAACAATGG--
 A C G T A C G T C G T A A T C G A G T C G C T A C G T A A G C T A C T G A T C G G T A C C G T A
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-AGCAATGGCA
GAACAATGGN-
 A C G T C G T A A T C G A G T C G C T A C G T A A G C T A C T G A T C G G T A C C G T A
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T

SOX21/MA0866.1/Jaspar

Match Rank:4
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AGCAATGGCA-----
AACAATGGTAGTGTT
 C G T A A T C G A G T C G C T A C G T A A G C T A C T G A T C G G T A C C G T A A C G T A C G T A C G T A C G T A C G T
C T G A T C G A A T G C T C G A T C G A C A G T C A T G C A T G G A C T T C G A C A T G C G A T C T A G C A G T A G C T

PB0070.1_Sox30_1/Jaspar

Match Rank:5
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----AGCAATGGCA--
AATGAACAATGGAATT
 A C G T A C G T A C G T A C G T C G T A A T C G A G T C G C T A C G T A A G C T A C T G A T C G G T A C C G T A A C G T A C G T
C T G A G C A T C A G T A T C G T C G A C G T A A G T C G C T A C T G A C G A T C A T G T C A G G C T A G T C A G A C T G A C T

Ddit3::Cebpa/MA0019.1/Jaspar

Match Rank:6
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:AGCAATGGCA---
-GGGATTGCATNN
 C G T A A T C G A G T C G C T A C G T A A G C T A C T G A T C G G T A C C G T A A C G T A C G T A C G T
A C G T T C A G A T C G A C T G C T G A A C G T A C G T C A T G G T A C C T G A A G C T A G T C A G C T

Sox2/MA0143.3/Jaspar

Match Rank:7
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:AGCAATGGCA
AACAAAGG--
 C G T A A T C G A G T C G C T A C G T A A G C T A C T G A T C G G T A C C G T A
T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:8
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AGCAATGGCA
RAACAATGGN-
 A C G T C G T A A T C G A G T C G C T A C G T A A G C T A C T G A T C G G T A C C G T A
C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:9
Score:0.60
Offset:2
Orientation:forward strand
Alignment:AGCAATGGCA--
--CAAGGHCANV
 C G T A A T C G A G T C G C T A C G T A A G C T A C T G A T C G G T A C C G T A A C G T A C G T
A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

YY2/MA0748.1/Jaspar

Match Rank:10
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:AGCAATGGCA---
--TAATGGCGGNC
 C G T A A T C G A G T C G C T A C G T A A G C T A C T G A T C G G T A C C G T A A C G T A C G T A C G T
A C G T A C G T G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C