Information for 4-GRGGGCAGYA (Motif 2)

A C T G C T G A C A T G C T A G C T A G A G T C C G T A A C T G G A C T C T G A
Reverse Opposite:
A G C T C T G A A G T C A C G T A C T G A G T C A G T C G T A C A G C T A G T C
p-value:1e-42
log p-value:-9.865e+01
Information Content per bp:1.766
Number of Target Sequences with motif115.0
Percentage of Target Sequences with motif13.92%
Number of Background Sequences with motif1369.3
Percentage of Background Sequences with motif2.87%
Average Position of motif in Targets48.2 +/- 22.9bp
Average Position of motif in Background49.7 +/- 31.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:GRGGGCAGYA
---CACAGN-
 A C T G C T G A C A T G C T A G C T A G A G T C C G T A A C T G G A C T C T G A
A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T

THAP1/MA0597.1/Jaspar

Match Rank:2
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GRGGGCAGYA
TNNGGGCAG--
 A C G T A C T G C T G A C A T G C T A G C T A G A G T C C G T A A C T G G A C T C T G A
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:3
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GRGGGCAGYA
TRAGGTCA---
 A C G T A C T G C T G A C A T G C T A G C T A G A G T C C G T A A C T G G A C T C T G A
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:4
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GRGGGCAGYA
AGRGGTCA---
 A C G T A C T G C T G A C A T G C T A G C T A G A G T C C G T A A C T G G A C T C T G A
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:5
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GRGGGCAGYA
GGTGYTGACAGS-
 A C G T A C G T A C G T A C T G C T G A C A T G C T A G C T A G A G T C C G T A A C T G G A C T C T G A
T C A G A T C G G A C T A C T G G A C T C A G T C T A G C G T A G T A C C G T A C T A G A T C G A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:6
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GRGGGCAGYA
CCAGGAACAG--
 A C G T A C G T A C T G C T G A C A T G C T A G C T A G A G T C C G T A A C T G G A C T C T G A
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T

ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GRGGGCAGYA---
ARGAGGMCAAAATGW
 A C G T A C G T A C T G C T G A C A T G C T A G C T A G A G T C C G T A A C T G G A C T C T G A A C G T A C G T A C G T
T G C A C T A G C T A G C T G A C A T G A C T G T G C A G A T C G T C A T G C A G T C A G T C A A G C T C T A G G C A T

MEIS2/MA0774.1/Jaspar

Match Rank:8
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GRGGGCAGYA
-TTGACAGC-
 A C T G C T G A C A T G C T A G C T A G A G T C C G T A A C T G G A C T C T G A
A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T

HIC2/MA0738.1/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GRGGGCAGYA
NGTGGGCAT--
 A C G T A C T G C T G A C A T G C T A G C T A G A G T C C G T A A C T G G A C T C T G A
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:10
Score:0.58
Offset:-9
Orientation:reverse strand
Alignment:---------GRGGGCAGYA-
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C T G A C A T G C T A G C T A G A G T C C G T A A C T G G A C T C T G A A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T