Information for 11-AGCADCTCAACAC (Motif 9)

C G T A A T C G G T A C C T G A C A T G A G T C A C G T A G T C C G T A C G T A A G T C T C G A A T G C
Reverse Opposite:
A T C G A G C T A C T G A C G T A C G T C T A G C G T A A C T G G A T C A G C T A C T G A T G C A C G T
p-value:1e-11
log p-value:-2.720e+01
Information Content per bp:1.844
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif4.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets31.6 +/- 27.5bp
Average Position of motif in Background25.7 +/- 7.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:1
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AGCADCTCAACAC
AGCCACTCAAG--
 C G T A A T C G G T A C C T G A C A T G A G T C A C G T A G T C C G T A C G T A A G T C T C G A A T G C
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T A C G T

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:2
Score:0.54
Offset:5
Orientation:forward strand
Alignment:AGCADCTCAACAC--
-----ATTAACACCT
 C G T A A T C G G T A C C T G A C A T G A G T C A C G T A G T C C G T A C G T A A G T C T C G A A T G C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A G A C T G A C T T G C A C G T A A G T C C G T A T A G C G A T C G A C T

PB0121.1_Foxj3_2/Jaspar

Match Rank:3
Score:0.54
Offset:0
Orientation:forward strand
Alignment:AGCADCTCAACAC----
AACACCAAAACAAAGGA
 C G T A A T C G G T A C C T G A C A T G A G T C A C G T A G T C C G T A C G T A A G T C T C G A A T G C A C G T A C G T A C G T A C G T
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A

PH0115.1_Nkx2-6/Jaspar

Match Rank:4
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--AGCADCTCAACAC-
TAAGCCACTTAACATT
 A C G T A C G T C G T A A T C G G T A C C T G A C A T G A G T C A C G T A G T C C G T A C G T A A G T C T C G A A T G C A C G T
C A G T C T G A C T G A C A T G T A G C A G T C C G T A G T A C A C G T A G C T C T G A C G T A T G A C G C T A G A C T G A C T

PH0113.1_Nkx2-4/Jaspar

Match Rank:5
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--AGCADCTCAACAC-
TAAGCCACTTGAAATT
 A C G T A C G T C G T A A T C G G T A C C T G A C A T G A G T C A C G T A G T C C G T A C G T A A G T C T C G A A T G C A C G T
G C A T C G T A C G T A C T A G T A G C G A T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G C T A G C A T G A C T

Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:6
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--AGCADCTCAACAC-----
GAAGTANCACGAATNMRAGT
 A C G T A C G T C G T A A T C G G T A C C T G A C A T G A G T C A C G T A G T C C G T A C G T A A G T C T C G A A T G C A C G T A C G T A C G T A C G T A C G T
C T A G C T G A C T G A C T A G G A C T C T G A T A C G A G T C G C T A G A T C C T A G T C G A T G C A G A C T A C G T G T C A T C A G C T G A C A T G G A C T

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:7
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:AGCADCTCAACAC-
--SCTGTCARCACC
 C G T A A T C G G T A C C T G A C A T G A G T C A C G T A G T C C G T A C G T A A G T C T C G A A T G C A C G T
A C G T A C G T T A G C G A T C C G A T C A T G G C A T A G T C G T C A C T G A A G T C C T G A T A G C A G T C

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:8
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---AGCADCTCAACAC-
CTTAACCACTTAAGGAT
 A C G T A C G T A C G T C G T A A T C G G T A C C T G A C A T G A G T C A C G T A G T C C G T A C G T A A G T C T C G A A T G C A C G T
G T A C G C A T C G A T T C G A C T G A T A G C A G T C C G T A G T A C A C G T A G C T C G T A C G T A T A C G A C T G T C G A A C G T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:9
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:AGCADCTCAACAC---
------TTMACACCTT
 C G T A A T C G G T A C C T G A C A T G A G T C A C G T A G T C C G T A C G T A A G T C T C G A A T G C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A G T G A C T G T A C C T G A A T G C T C G A T A G C G T A C G A C T G A C T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:10
Score:0.52
Offset:0
Orientation:forward strand
Alignment:AGCADCTCAACAC
AASCACTCAA---
 C G T A A T C G G T A C C T G A C A T G A G T C A C G T A G T C C G T A C G T A A G T C T C G A A T G C
C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T A C G T A C G T