Information for 5-TGGCASCATA (Motif 3)

C G A T C T A G T C A G A G T C C G T A T A C G A G T C G T C A A G C T C T G A
Reverse Opposite:
G A C T T C G A A C G T A C T G A T G C C G A T A C T G A G T C A G T C C G T A
p-value:1e-17
log p-value:-4.042e+01
Information Content per bp:1.761
Number of Target Sequences with motif42.0
Percentage of Target Sequences with motif5.01%
Number of Background Sequences with motif300.7
Percentage of Background Sequences with motif0.92%
Average Position of motif in Targets51.1 +/- 28.9bp
Average Position of motif in Background50.1 +/- 29.2bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:1
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:TGGCASCATA
TTGCAACATN
 C G A T C T A G T C A G A G T C C G T A T A C G A G T C G T C A A G C T C T G A
C A G T A C G T C T A G A G T C G T C A C G T A G A T C G C T A A G C T G A T C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--TGGCASCATA
CTTGGCAA----
 A C G T A C G T C G A T C T A G T C A G A G T C C G T A T A C G A G T C G T C A A G C T C T G A
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--TGGCASCATA
NTTGGCANN---
 A C G T A C G T C G A T C T A G T C A G A G T C C G T A T A C G A G T C G T C A A G C T C T G A
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:4
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---TGGCASCATA
NNTTGGCANN---
 A C G T A C G T A C G T C G A T C T A G T C A G A G T C C G T A T A C G A G T C G T C A A G C T C T G A
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:5
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--TGGCASCATA
SCTGTCARCACC
 A C G T A C G T C G A T C T A G T C A G A G T C C G T A T A C G A G T C G T C A A G C T C T G A
T A G C G A T C C G A T C A T G G C A T A G T C G T C A C T G A A G T C C T G A T A G C A G T C

NFIC/MA0161.1/Jaspar

Match Rank:6
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-TGGCASCATA
TTGGCA-----
 A C G T C G A T C T A G T C A G A G T C C G T A T A C G A G T C G T C A A G C T C T G A
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:7
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-TGGCASCATA
ATTGCATCAK-
 A C G T C G A T C T A G T C A G A G T C C G T A T A C G A G T C G T C A A G C T C T G A
T C G A A C G T A C G T C T A G A G T C T C G A G C A T G T A C C T G A A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:8
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---TGGCASCATA
GGTTGGCAT----
 A C G T A C G T A C G T C G A T C T A G T C A G A G T C C G T A T A C G A G T C G T C A A G C T C T G A
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:9
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-TGGCASCATA
ATTGCATCAT-
 A C G T C G A T C T A G T C A G A G T C C G T A T A C G A G T C G T C A A G C T C T G A
T C G A G C A T A C G T C T A G G T A C T C G A G C A T T G A C T C G A A C G T A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---TGGCASCATA
SCCTAGCAACAG-
 A C G T A C G T A C G T C G A T C T A G T C A G A G T C C G T A T A C G A G T C G T C A A G C T C T G A
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G A C G T