Information for 12-TCWCCTATCA (Motif 18)

A C G T A G T C C G T A A G T C A G T C A C G T C G T A G C A T A G T C C G T A
Reverse Opposite:
A C G T C T A G C G T A C G A T G T C A C T A G C T A G C G A T A C T G T G C A
p-value:1e-6
log p-value:-1.442e+01
Information Content per bp:1.816
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.31%
Number of Background Sequences with motif59.6
Percentage of Background Sequences with motif0.18%
Average Position of motif in Targets49.6 +/- 30.3bp
Average Position of motif in Background46.4 +/- 27.3bp
Strand Bias (log2 ratio + to - strand density)-1.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:1
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-TCWCCTATCA-
GYCATCMATCAT
 A C G T A C G T A G T C C G T A A G T C A G T C A C G T C G T A G C A T A G T C C G T A A C G T
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

PH0134.1_Pbx1/Jaspar

Match Rank:2
Score:0.66
Offset:0
Orientation:forward strand
Alignment:TCWCCTATCA-------
TCACCCATCAATAAACA
 A C G T A G T C C G T A A G T C A G T C A C G T C G T A G C A T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:3
Score:0.66
Offset:0
Orientation:forward strand
Alignment:TCWCCTATCA
TCATCAATCA
 A C G T A G T C C G T A A G T C A G T C A C G T C G T A G C A T A G T C C G T A
G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A

Dux/MA0611.1/Jaspar

Match Rank:4
Score:0.64
Offset:3
Orientation:forward strand
Alignment:TCWCCTATCA-
---CCAATCAA
 A C G T A G T C C G T A A G T C A G T C A C G T C G T A G C A T A G T C C G T A A C G T
A C G T A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A

PB0128.1_Gcm1_2/Jaspar

Match Rank:5
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----TCWCCTATCA---
NTCNTCCCCTATNNGNN
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A G T C A G T C A C G T C G T A G C A T A G T C C G T A A C G T A C G T A C G T
T G A C C A G T A G T C T A G C A G C T A G T C T A G C G T A C G T A C A G C T C T G A A G C T C A T G A T G C T A C G G T A C G C T A

PBX1/MA0070.1/Jaspar

Match Rank:6
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TCWCCTATCA--
CCATCAATCAAA
 A C G T A G T C C G T A A G T C A G T C A C G T C G T A G C A T A G T C C G T A A C G T A C G T
G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A

VENTX/MA0724.1/Jaspar

Match Rank:7
Score:0.61
Offset:2
Orientation:forward strand
Alignment:TCWCCTATCA-
--ACCGATTAG
 A C G T A G T C C G T A A G T C A G T C A C G T C G T A G C A T A G T C C G T A A C G T
A C G T A C G T C G T A T G A C G A T C T C A G G T C A A C G T A C G T C G T A C T A G

PB0022.1_Gata5_1/Jaspar

Match Rank:8
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--TCWCCTATCA-----
NTNTTCTTATCAGTNTN
 A C G T A C G T A C G T A G T C C G T A A G T C A G T C A C G T C G T A G C A T A G T C C G T A A C G T A C G T A C G T A C G T A C G T
G C T A G C A T G T A C A G C T A G C T A T G C C G A T C G A T C G T A A C G T A G T C C G T A T C A G G A C T G C A T G C A T C G T A

PH0104.1_Meis2/Jaspar

Match Rank:9
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TCWCCTATCA----
AAAGACCTGTCAATAC
 A C G T A C G T A C G T A G T C C G T A A G T C A G T C A C G T C G T A G C A T A G T C C G T A A C G T A C G T A C G T A C G T
G C T A C G T A T C A G A T C G C T G A A T G C G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T G T C A A G T C

NFYB/MA0502.1/Jaspar

Match Rank:10
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----TCWCCTATCA-
AAATGGACCAATCAG
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A G T C A G T C A C G T C G T A G C A T A G T C C G T A A C G T
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G