Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 845)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 47657)	% of Background Sequences with Motif
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-555	-1.278e+03	0.0000	370.0	43.79%	319.3	0.67%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-456	-1.052e+03	0.0000	384.0	45.44%	691.0	1.46%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-13	-3.210e+01	0.0000	14.0	1.66%	37.0	0.08%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-12	-2.984e+01	0.0000	202.0	23.91%	6797.8	14.33%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-9	-2.104e+01	0.0000	83.0	9.82%	2255.2	4.76%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-7	-1.826e+01	0.0000	78.0	9.23%	2199.8	4.64%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-7	-1.695e+01	0.0000	66.0	7.81%	1793.0	3.78%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-5	-1.211e+01	0.0002	141.0	16.69%	5470.0	11.53%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-5	-1.181e+01	0.0003	317.0	37.51%	14452.0	30.47%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e-5	-1.162e+01	0.0003	63.0	7.46%	1972.4	4.16%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-4	-1.120e+01	0.0005	101.0	11.95%	3685.0	7.77%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e-4	-1.099e+01	0.0005	139.0	16.45%	5498.8	11.59%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-4	-9.463e+00	0.0022	122.0	14.44%	4855.2	10.24%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-4	-9.279e+00	0.0024	191.0	22.60%	8301.5	17.50%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-3	-9.169e+00	0.0025	132.0	15.62%	5375.4	11.33%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-2	-6.600e+00	0.0310	190.0	22.49%	8698.6	18.34%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-2	-5.747e+00	0.0683	10.0	1.18%	196.6	0.41%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-2	-5.652e+00	0.0710	13.0	1.54%	301.7	0.64%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-2	-5.269e+00	0.0986	102.0	12.07%	4437.3	9.36%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e-2	-5.205e+00	0.0999	125.0	14.79%	5610.6	11.83%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-2	-5.153e+00	0.1002	15.0	1.78%	395.4	0.83%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-1	-4.570e+00	0.1714	11.0	1.30%	270.7	0.57%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e-1	-4.528e+00	0.1714	39.0	4.62%	1475.8	3.11%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-1	-4.156e+00	0.2377	126.0	14.91%	5863.8	12.36%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-1	-4.090e+00	0.2437	16.0	1.89%	490.9	1.04%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-1	-4.016e+00	0.2524	78.0	9.23%	3437.9	7.25%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-1	-3.987e+00	0.2524	31.0	3.67%	1160.0	2.45%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-1	-3.916e+00	0.2591	83.0	9.82%	3706.8	7.82%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-1	-3.806e+00	0.2790	178.0	21.07%	8677.4	18.30%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-1	-3.737e+00	0.2892	13.0	1.54%	387.1	0.82%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-1	-3.450e+00	0.3728	28.0	3.31%	1073.1	2.26%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-1	-3.441e+00	0.3728	7.0	0.83%	167.1	0.35%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-1	-3.381e+00	0.3751	14.0	1.66%	450.5	0.95%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-1	-3.362e+00	0.3751	4.0	0.47%	68.3	0.14%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-1	-3.336e+00	0.3751	60.0	7.10%	2646.0	5.58%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-1	-3.327e+00	0.3751	18.0	2.13%	628.8	1.33%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-1	-3.325e+00	0.3751	35.0	4.14%	1418.3	2.99%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-1	-3.270e+00	0.3751	23.0	2.72%	859.0	1.81%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-1	-3.161e+00	0.3956	192.0	22.72%	9607.5	20.26%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-1	-3.148e+00	0.3956	24.0	2.84%	917.5	1.93%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-1	-3.055e+00	0.4183	21.0	2.49%	787.9	1.66%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-1	-3.040e+00	0.4183	50.0	5.92%	2193.8	4.63%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-1	-2.986e+00	0.4272	4.0	0.47%	78.0	0.16%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-1	-2.979e+00	0.4272	33.0	3.91%	1364.6	2.88%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-1	-2.821e+00	0.4814	51.0	6.04%	2279.6	4.81%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-1	-2.608e+00	0.5832	74.0	8.76%	3499.9	7.38%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e-1	-2.599e+00	0.5832	22.0	2.60%	880.5	1.86%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-1	-2.589e+00	0.5832	19.0	2.25%	739.2	1.56%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-1	-2.548e+00	0.5832	25.0	2.96%	1030.8	2.17%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-1	-2.543e+00	0.5832	32.0	3.79%	1373.7	2.90%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-1	-2.484e+00	0.5953	23.0	2.72%	941.9	1.99%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-1	-2.460e+00	0.5982	9.0	1.07%	296.0	0.62%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-1	-2.429e+00	0.6052	33.0	3.91%	1439.9	3.04%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-1	-2.378e+00	0.6249	136.0	16.09%	6841.1	14.42%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-1	-2.334e+00	0.6412	21.0	2.49%	862.4	1.82%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-2.242e+00	0.6907	18.0	2.13%	728.8	1.54%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-2.212e+00	0.6994	20.0	2.37%	829.0	1.75%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-2.192e+00	0.7006	10.0	1.18%	358.7	0.76%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-2.186e+00	0.7006	37.0	4.38%	1680.0	3.54%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-2.170e+00	0.7006	30.0	3.55%	1328.2	2.80%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-2.142e+00	0.7010	5.0	0.59%	144.9	0.31%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-2.136e+00	0.7010	21.0	2.49%	886.7	1.87%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-2.128e+00	0.7010	3.0	0.36%	67.7	0.14%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-2.097e+00	0.7010	33.0	3.91%	1491.0	3.14%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-2.084e+00	0.7010	75.0	8.88%	3676.5	7.75%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-2.055e+00	0.7061	80.0	9.47%	3948.0	8.32%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-2.033e+00	0.7113	70.0	8.28%	3425.9	7.22%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-2.032e+00	0.7113	33.0	3.91%	1502.1	3.17%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-2.015e+00	0.7113	27.0	3.20%	1201.1	2.53%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-1.956e+00	0.7353	64.0	7.57%	3128.6	6.60%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-1.927e+00	0.7460	78.0	9.23%	3878.0	8.18%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-1.903e+00	0.7536	30.0	3.55%	1371.8	2.89%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-1.868e+00	0.7698	5.0	0.59%	158.8	0.33%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-1.857e+00	0.7698	27.0	3.20%	1226.3	2.59%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-1.844e+00	0.7698	28.0	3.31%	1279.1	2.70%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-1.840e+00	0.7698	8.0	0.95%	294.5	0.62%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-1.836e+00	0.7698	17.0	2.01%	727.3	1.53%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-1.815e+00	0.7698	8.0	0.95%	296.9	0.63%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-1.782e+00	0.7755	60.0	7.10%	2961.4	6.24%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.775e+00	0.7755	21.0	2.49%	935.3	1.97%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-1.696e+00	0.8238	6.0	0.71%	213.9	0.45%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.642e+00	0.8590	9.0	1.07%	358.8	0.76%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-1.632e+00	0.8590	19.0	2.25%	855.5	1.80%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.631e+00	0.8590	23.0	2.72%	1059.8	2.23%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-1.617e+00	0.8590	153.0	18.11%	8042.6	16.96%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.581e+00	0.8709	22.0	2.60%	1016.2	2.14%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-1.578e+00	0.8709	25.0	2.96%	1171.7	2.47%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-1.494e+00	0.9289	18.0	2.13%	825.8	1.74%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-1.491e+00	0.9289	64.0	7.57%	3256.0	6.87%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-1.438e+00	0.9603	10.0	1.18%	428.8	0.90%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-1.435e+00	0.9603	29.0	3.43%	1407.3	2.97%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-1.421e+00	0.9603	8.0	0.95%	331.6	0.70%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-1.401e+00	0.9639	5.0	0.59%	188.5	0.40%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-1.370e+00	0.9841	50.0	5.92%	2540.6	5.36%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.348e+00	0.9954	11.0	1.30%	489.2	1.03%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-1.346e+00	0.9954	13.0	1.54%	591.8	1.25%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e0	-1.345e+00	0.9954	18.0	2.13%	849.5	1.79%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-1.342e+00	0.9954	40.0	4.73%	2013.0	4.24%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-1.278e+00	1.0000	27.0	3.20%	1335.0	2.81%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-1.271e+00	1.0000	11.0	1.30%	499.5	1.05%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-1.260e+00	1.0000	4.0	0.47%	151.9	0.32%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-1.215e+00	1.0000	33.0	3.91%	1670.9	3.52%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-1.207e+00	1.0000	63.0	7.46%	3295.6	6.95%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-1.192e+00	1.0000	19.0	2.25%	929.5	1.96%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-1.184e+00	1.0000	12.0	1.42%	563.9	1.19%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.164e+00	1.0000	1.0	0.12%	22.0	0.05%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-1.149e+00	1.0000	40.0	4.73%	2065.7	4.36%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-1.146e+00	1.0000	45.0	5.33%	2337.7	4.93%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-1.141e+00	1.0000	8.0	0.95%	362.1	0.76%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-1.137e+00	1.0000	87.0	10.30%	4635.1	9.77%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.132e+00	1.0000	8.0	0.95%	363.8	0.77%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-1.125e+00	1.0000	15.0	1.78%	730.2	1.54%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.105e+00	1.0000	4.0	0.47%	163.8	0.35%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.105e+00	1.0000	4.0	0.47%	163.6	0.34%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-1.103e+00	1.0000	3.0	0.36%	114.7	0.24%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-1.101e+00	1.0000	10.0	1.18%	471.6	0.99%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-1.090e+00	1.0000	1.0	0.12%	23.4	0.05%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.087e+00	1.0000	7.0	0.83%	317.9	0.67%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.081e+00	1.0000	4.0	0.47%	165.5	0.35%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-1.069e+00	1.0000	26.0	3.08%	1330.2	2.80%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-1.037e+00	1.0000	2.0	0.24%	70.4	0.15%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-1.007e+00	1.0000	39.0	4.62%	2054.0	4.33%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-1.006e+00	1.0000	33.0	3.91%	1727.1	3.64%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.002e+00	1.0000	8.0	0.95%	381.0	0.80%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-9.838e-01	1.0000	11.0	1.30%	542.3	1.14%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-9.828e-01	1.0000	114.0	13.49%	6200.4	13.07%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-9.786e-01	1.0000	6.0	0.71%	278.3	0.59%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-9.771e-01	1.0000	5.0	0.59%	226.7	0.48%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-9.679e-01	1.0000	3.0	0.36%	124.4	0.26%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-9.672e-01	1.0000	51.0	6.04%	2726.6	5.75%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-9.269e-01	1.0000	48.0	5.68%	2576.2	5.43%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-9.263e-01	1.0000	58.0	6.86%	3128.1	6.60%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-9.193e-01	1.0000	28.0	3.31%	1479.6	3.12%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-9.176e-01	1.0000	20.0	2.37%	1043.0	2.20%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-9.100e-01	1.0000	13.0	1.54%	663.3	1.40%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-9.063e-01	1.0000	6.0	0.71%	287.6	0.61%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-8.838e-01	1.0000	68.0	8.05%	3700.2	7.80%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-8.761e-01	1.0000	11.0	1.30%	561.4	1.18%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-8.721e-01	1.0000	65.0	7.69%	3539.6	7.46%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-8.676e-01	1.0000	12.0	1.42%	617.8	1.30%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-8.663e-01	1.0000	57.0	6.75%	3098.6	6.53%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-8.654e-01	1.0000	11.0	1.30%	563.8	1.19%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-8.568e-01	1.0000	1.0	0.12%	31.6	0.07%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-8.242e-01	1.0000	4.0	0.47%	190.3	0.40%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-8.184e-01	1.0000	3.0	0.36%	137.1	0.29%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-7.917e-01	1.0000	2.0	0.24%	86.3	0.18%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-7.840e-01	1.0000	18.0	2.13%	966.3	2.04%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-7.781e-01	1.0000	38.0	4.50%	2079.8	4.39%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-7.778e-01	1.0000	10.0	1.18%	525.3	1.11%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-7.764e-01	1.0000	6.0	0.71%	305.7	0.64%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-7.635e-01	1.0000	24.0	2.84%	1305.8	2.75%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-7.631e-01	1.0000	6.0	0.71%	307.3	0.65%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-7.591e-01	1.0000	13.0	1.54%	695.3	1.47%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-7.362e-01	1.0000	14.0	1.66%	756.9	1.60%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-7.282e-01	1.0000	7.0	0.83%	368.1	0.78%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-7.185e-01	1.0000	98.0	11.60%	5463.4	11.52%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-7.184e-01	1.0000	96.0	11.36%	5351.1	11.28%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-7.161e-01	1.0000	27.0	3.20%	1488.7	3.14%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-7.139e-01	1.0000	100.0	11.83%	5578.8	11.76%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-7.103e-01	1.0000	30.0	3.55%	1658.1	3.50%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-7.092e-01	1.0000	10.0	1.18%	539.8	1.14%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-6.957e-01	1.0000	174.0	20.59%	9741.3	20.54%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-6.769e-01	1.0000	10.0	1.18%	546.2	1.15%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-6.643e-01	1.0000	6.0	0.71%	323.7	0.68%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-6.614e-01	1.0000	9.0	1.07%	493.2	1.04%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-6.590e-01	1.0000	3.0	0.36%	154.1	0.33%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-6.586e-01	1.0000	25.0	2.96%	1396.1	2.94%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-6.531e-01	1.0000	72.0	8.52%	4045.0	8.53%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-6.434e-01	1.0000	47.0	5.56%	2642.9	5.57%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-6.140e-01	1.0000	6.0	0.71%	332.6	0.70%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-6.099e-01	1.0000	28.0	3.31%	1584.3	3.34%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-6.088e-01	1.0000	4.0	0.47%	218.3	0.46%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-5.910e-01	1.0000	19.0	2.25%	1080.6	2.28%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-5.796e-01	1.0000	8.0	0.95%	454.3	0.96%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-5.592e-01	1.0000	25.0	2.96%	1434.6	3.02%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-5.475e-01	1.0000	2.0	0.24%	109.6	0.23%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-5.375e-01	1.0000	19.0	2.25%	1099.8	2.32%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-5.333e-01	1.0000	6.0	0.71%	348.9	0.74%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-5.252e-01	1.0000	49.0	5.80%	2819.8	5.95%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-5.195e-01	1.0000	10.0	1.18%	585.5	1.23%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-5.192e-01	1.0000	21.0	2.49%	1222.0	2.58%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e0	-5.161e-01	1.0000	34.0	4.02%	1968.7	4.15%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-4.930e-01	1.0000	14.0	1.66%	826.5	1.74%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-4.914e-01	1.0000	54.0	6.39%	3126.0	6.59%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-4.784e-01	1.0000	9.0	1.07%	538.4	1.14%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-4.655e-01	1.0000	7.0	0.83%	423.6	0.89%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-4.393e-01	1.0000	4.0	0.47%	248.3	0.52%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-4.335e-01	1.0000	19.0	2.25%	1141.3	2.41%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-4.297e-01	1.0000	1.0	0.12%	59.9	0.13%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-4.280e-01	1.0000	49.0	5.80%	2881.4	6.08%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-4.272e-01	1.0000	14.0	1.66%	850.8	1.79%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-4.272e-01	1.0000	25.0	2.96%	1494.0	3.15%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-4.266e-01	1.0000	12.0	1.42%	732.0	1.54%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-4.253e-01	1.0000	8.0	0.95%	494.3	1.04%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-4.200e-01	1.0000	38.0	4.50%	2252.2	4.75%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-4.199e-01	1.0000	26.0	3.08%	1556.2	3.28%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-4.195e-01	1.0000	14.0	1.66%	853.7	1.80%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-4.186e-01	1.0000	3.0	0.36%	190.7	0.40%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-4.144e-01	1.0000	70.0	8.28%	4097.2	8.64%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-4.123e-01	1.0000	56.0	6.63%	3296.0	6.95%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e0	-4.123e-01	1.0000	15.0	1.78%	915.3	1.93%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-4.074e-01	1.0000	18.0	2.13%	1094.5	2.31%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-3.921e-01	1.0000	26.0	3.08%	1571.0	3.31%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-3.839e-01	1.0000	10.0	1.18%	628.4	1.33%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-3.805e-01	1.0000	16.0	1.89%	988.0	2.08%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-3.758e-01	1.0000	6.0	0.71%	387.4	0.82%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-3.705e-01	1.0000	27.0	3.20%	1642.7	3.46%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-3.690e-01	1.0000	14.0	1.66%	874.2	1.84%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-3.654e-01	1.0000	27.0	3.20%	1646.0	3.47%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-3.630e-01	1.0000	24.0	2.84%	1471.0	3.10%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-3.526e-01	1.0000	83.0	9.82%	4900.5	10.33%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-3.466e-01	1.0000	3.0	0.36%	205.9	0.43%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-3.456e-01	1.0000	1.0	0.12%	69.4	0.15%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-3.429e-01	1.0000	66.0	7.81%	3930.1	8.29%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-3.383e-01	1.0000	1.0	0.12%	70.8	0.15%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-3.305e-01	1.0000	15.0	1.78%	952.2	2.01%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-3.296e-01	1.0000	12.0	1.42%	771.5	1.63%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-3.273e-01	1.0000	35.0	4.14%	2140.8	4.51%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-3.255e-01	1.0000	3.0	0.36%	210.3	0.44%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-3.241e-01	1.0000	27.0	3.20%	1671.2	3.52%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-3.227e-01	1.0000	32.0	3.79%	1967.6	4.15%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-3.216e-01	1.0000	8.0	0.95%	529.7	1.12%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-3.174e-01	1.0000	3.0	0.36%	212.1	0.45%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-3.166e-01	1.0000	12.0	1.42%	777.2	1.64%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-3.124e-01	1.0000	4.0	0.47%	279.7	0.59%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-3.110e-01	1.0000	1.0	0.12%	74.2	0.16%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-3.056e-01	1.0000	3.0	0.36%	215.8	0.45%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-3.011e-01	1.0000	11.0	1.30%	723.3	1.53%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-3.007e-01	1.0000	19.0	2.25%	1209.0	2.55%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.964e-01	1.0000	2.0	0.24%	149.6	0.32%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.964e-01	1.0000	2.0	0.24%	149.6	0.32%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-2.852e-01	1.0000	15.0	1.78%	976.2	2.06%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-2.818e-01	1.0000	7.0	0.83%	482.6	1.02%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-2.790e-01	1.0000	2.0	0.24%	153.4	0.32%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-2.744e-01	1.0000	70.0	8.28%	4233.5	8.93%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-2.523e-01	1.0000	6.0	0.71%	430.0	0.91%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-2.499e-01	1.0000	4.0	0.47%	299.7	0.63%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-2.480e-01	1.0000	1.0	0.12%	85.2	0.18%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-2.441e-01	1.0000	13.0	1.54%	877.5	1.85%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-2.427e-01	1.0000	19.0	2.25%	1247.7	2.63%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e0	-2.308e-01	1.0000	59.0	6.98%	3642.2	7.68%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-2.298e-01	1.0000	26.0	3.08%	1682.5	3.55%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-2.266e-01	1.0000	31.0	3.67%	1986.0	4.19%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-2.266e-01	1.0000	17.0	2.01%	1136.2	2.40%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-2.147e-01	1.0000	6.0	0.71%	447.3	0.94%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-2.126e-01	1.0000	6.0	0.71%	448.9	0.95%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-2.074e-01	1.0000	66.0	7.81%	4085.0	8.61%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-2.066e-01	1.0000	16.0	1.89%	1089.3	2.30%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-2.019e-01	1.0000	8.0	0.95%	585.2	1.23%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-1.976e-01	1.0000	16.0	1.89%	1097.0	2.31%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-1.951e-01	1.0000	1.0	0.12%	97.7	0.21%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-1.933e-01	1.0000	19.0	2.25%	1286.7	2.71%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.927e-01	1.0000	4.0	0.47%	322.8	0.68%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-1.920e-01	1.0000	14.0	1.66%	975.8	2.06%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-1.913e-01	1.0000	1.0	0.12%	98.9	0.21%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-1.899e-01	1.0000	10.0	1.18%	722.2	1.52%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-1.853e-01	1.0000	16.0	1.89%	1106.0	2.33%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-1.750e-01	1.0000	5.0	0.59%	400.2	0.84%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-1.719e-01	1.0000	4.0	0.47%	332.7	0.70%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-1.701e-01	1.0000	10.0	1.18%	736.5	1.55%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-1.690e-01	1.0000	25.0	2.96%	1680.9	3.54%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.670e-01	1.0000	6.0	0.71%	473.6	1.00%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-1.639e-01	1.0000	3.0	0.36%	264.3	0.56%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-1.616e-01	1.0000	43.0	5.09%	2783.5	5.87%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.605e-01	1.0000	1.0	0.12%	107.8	0.23%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.589e-01	1.0000	20.0	2.37%	1381.1	2.91%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-1.574e-01	1.0000	1.0	0.12%	108.4	0.23%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-1.573e-01	1.0000	11.0	1.30%	811.4	1.71%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-1.559e-01	1.0000	5.0	0.59%	411.8	0.87%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-1.555e-01	1.0000	19.0	2.25%	1322.1	2.79%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.544e-01	1.0000	1.0	0.12%	109.3	0.23%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-1.529e-01	1.0000	21.0	2.49%	1450.7	3.06%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-1.524e-01	1.0000	16.0	1.89%	1136.7	2.40%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-1.474e-01	1.0000	63.0	7.46%	4002.8	8.44%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-1.471e-01	1.0000	60.0	7.10%	3824.4	8.06%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-1.447e-01	1.0000	71.0	8.40%	4482.9	9.45%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-1.442e-01	1.0000	2.0	0.24%	197.0	0.42%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-1.407e-01	1.0000	14.0	1.66%	1020.9	2.15%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-1.307e-01	1.0000	35.0	4.14%	2344.6	4.94%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-1.288e-01	1.0000	24.0	2.84%	1667.2	3.52%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-1.285e-01	1.0000	11.0	1.30%	837.2	1.77%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-1.227e-01	1.0000	1.0	0.12%	121.2	0.26%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-1.210e-01	1.0000	13.0	1.54%	976.0	2.06%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.202e-01	1.0000	59.0	6.98%	3816.4	8.05%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.133e-01	1.0000	16.0	1.89%	1180.4	2.49%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.128e-01	1.0000	76.0	8.99%	4848.6	10.22%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-1.115e-01	1.0000	10.0	1.18%	788.9	1.66%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.101e-01	1.0000	2.0	0.24%	215.1	0.45%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-1.016e-01	1.0000	1.0	0.12%	131.8	0.28%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.003e-01	1.0000	117.0	13.85%	7304.5	15.40%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-9.715e-02	1.0000	4.0	0.47%	381.7	0.80%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-9.195e-02	1.0000	2.0	0.24%	227.7	0.48%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-8.650e-02	1.0000	29.0	3.43%	2051.3	4.33%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-8.544e-02	1.0000	22.0	2.60%	1609.1	3.39%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-8.378e-02	1.0000	34.0	4.02%	2370.1	5.00%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-8.152e-02	1.0000	2.0	0.24%	235.4	0.50%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-8.027e-02	1.0000	9.0	1.07%	758.1	1.60%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-7.882e-02	1.0000	5.0	0.59%	474.6	1.00%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-7.736e-02	1.0000	103.0	12.19%	6558.1	13.83%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-7.675e-02	1.0000	1.0	0.12%	147.0	0.31%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-7.667e-02	1.0000	13.0	1.54%	1036.5	2.19%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-7.557e-02	1.0000	35.0	4.14%	2453.0	5.17%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-7.257e-02	1.0000	8.0	0.95%	699.6	1.48%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-7.232e-02	1.0000	40.0	4.73%	2772.1	5.85%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-6.896e-02	1.0000	5.0	0.59%	486.6	1.03%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-6.701e-02	1.0000	2.0	0.24%	248.6	0.52%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-6.438e-02	1.0000	35.0	4.14%	2482.6	5.23%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-5.954e-02	1.0000	49.0	5.80%	3369.5	7.10%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-5.924e-02	1.0000	1.0	0.12%	160.3	0.34%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-5.500e-02	1.0000	115.0	13.61%	7368.2	15.54%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-5.410e-02	1.0000	14.0	1.66%	1148.6	2.42%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-5.360e-02	1.0000	53.0	6.27%	3638.9	7.67%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-5.267e-02	1.0000	10.0	1.18%	875.5	1.85%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-5.037e-02	1.0000	9.0	1.07%	809.0	1.71%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-4.867e-02	1.0000	6.0	0.71%	593.8	1.25%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-4.793e-02	1.0000	7.0	0.83%	669.7	1.41%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e0	-4.444e-02	1.0000	16.0	1.89%	1309.7	2.76%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-4.401e-02	1.0000	18.0	2.13%	1445.5	3.05%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-4.057e-02	1.0000	14.0	1.66%	1184.7	2.50%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-4.003e-02	1.0000	4.0	0.47%	454.1	0.96%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-3.779e-02	1.0000	16.0	1.89%	1330.7	2.81%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-3.275e-02	1.0000	10.0	1.18%	928.0	1.96%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-3.085e-02	1.0000	5.0	0.59%	556.8	1.17%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-2.771e-02	1.0000	31.0	3.67%	2371.1	5.00%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-1.905e-02	1.0000	73.0	8.64%	5093.1	10.74%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-1.664e-02	1.0000	4.0	0.47%	523.5	1.10%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-1.559e-02	1.0000	4.0	0.47%	528.4	1.11%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.447e-02	1.0000	2.0	0.24%	348.4	0.73%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-1.322e-02	1.0000	68.0	8.05%	4857.5	10.24%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.231e-02	1.0000	6.0	0.71%	716.0	1.51%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-1.064e-02	1.0000	3.0	0.36%	467.0	0.98%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-1.024e-02	1.0000	38.0	4.50%	2986.9	6.30%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-6.818e-03	1.0000	55.0	6.51%	4156.5	8.76%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-6.702e-03	1.0000	6.0	0.71%	766.0	1.62%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-4.618e-03	1.0000	1.0	0.12%	301.5	0.64%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-1.812e-03	1.0000	2.0	0.24%	479.4	1.01%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-4.570e-04	1.0000	9.0	1.07%	1244.1	2.62%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	0.000e+00	1.0000	0.0	0.00%	36.3	0.08%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	0.000e+00	1.0000	0.0	0.00%	104.1	0.22%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	0.000e+00	1.0000	0.0	0.00%	71.9	0.15%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	0.000e+00	1.0000	0.0	0.00%	54.3	0.11%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	0.000e+00	1.0000	0.0	0.00%	34.6	0.07%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	33.7	0.07%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	24.8	0.05%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	0.000e+00	1.0000	0.0	0.00%	89.8	0.19%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	0.000e+00	1.0000	0.0	0.00%	92.4	0.19%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	0.000e+00	1.0000	0.0	0.00%	183.0	0.39%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	0.000e+00	1.0000	0.0	0.00%	144.9	0.31%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	0.000e+00	1.0000	0.0	0.00%	77.2	0.16%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	0.000e+00	1.0000	0.0	0.00%	57.6	0.12%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	0.000e+00	1.0000	0.0	0.00%	13.6	0.03%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	0.000e+00	1.0000	0.0	0.00%	8.9	0.02%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	0.000e+00	1.0000	0.0	0.00%	65.7	0.14%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	0.000e+00	1.0000	0.0	0.00%	41.5	0.09%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	0.000e+00	1.0000	0.0	0.00%	79.6	0.17%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	0.000e+00	1.0000	0.0	0.00%	112.1	0.24%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	0.000e+00	1.0000	0.0	0.00%	17.7	0.04%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	56.0	0.12%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	34.4	0.07%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	16.9	0.04%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	0.000e+00	1.0000	0.0	0.00%	113.3	0.24%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.9	0.00%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	0.000e+00	1.0000	0.0	0.00%	39.1	0.08%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	5.5	0.01%