Information for 7-WMTRCTGCCACCW (Motif 3)

C G A T G T A C A C G T C T A G A G T C A C G T A C T G A G T C A G T C C G T A A T G C A G T C G C A T
Reverse Opposite:
C G T A A C T G A T C G C G A T A C T G A C T G A G T C C G T A A C T G A G T C C G T A A C T G C G T A
p-value:1e-16
log p-value:-3.712e+01
Information Content per bp:1.869
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.01%
Number of Background Sequences with motif48.4
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets39.7 +/- 13.7bp
Average Position of motif in Background55.2 +/- 33.6bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hic1/MA0739.1/Jaspar

Match Rank:1
Score:0.66
Offset:4
Orientation:forward strand
Alignment:WMTRCTGCCACCW
----ATGCCAACC
 C G A T G T A C A C G T C T A G A G T C A C G T A C T G A G T C A G T C C G T A A T G C A G T C G C A T
A C G T A C G T A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:2
Score:0.65
Offset:5
Orientation:reverse strand
Alignment:WMTRCTGCCACCW
-----TGACACCT
 C G A T G T A C A C G T C T A G A G T C A C G T A C T G A G T C A G T C C G T A A T G C A G T C G C A T
A C G T A C G T A C G T A C G T A C G T G A C T T C A G C T G A A G T C C T G A T A G C G A T C G A C T

PB0029.1_Hic1_1/Jaspar

Match Rank:3
Score:0.62
Offset:1
Orientation:forward strand
Alignment:WMTRCTGCCACCW----
-ACTATGCCAACCTACC
 C G A T G T A C A C G T C T A G A G T C A C G T A C T G A G T C A G T C C G T A A T G C A G T C G C A T A C G T A C G T A C G T A C G T
A C G T C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:4
Score:0.62
Offset:2
Orientation:forward strand
Alignment:WMTRCTGCCACCW
--VGCTGWCAVB-
 C G A T G T A C A C G T C T A G A G T C A C G T A C T G A G T C A G T C C G T A A T G C A G T C G C A T
A C G T A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.61
Offset:4
Orientation:forward strand
Alignment:WMTRCTGCCACCW
----TTGCCAAG-
 C G A T G T A C A C G T C T A G A G T C A C G T A C T G A G T C A G T C C G T A A T G C A G T C G C A T
A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:6
Score:0.60
Offset:1
Orientation:forward strand
Alignment:WMTRCTGCCACCW--------
-ANAGTGCCACCTGGTGGCCA
 C G A T G T A C A C G T C T A G A G T C A C G T A C T G A G T C A G T C C G T A A T G C A G T C G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

Myb/MA0100.2/Jaspar

Match Rank:7
Score:0.59
Offset:0
Orientation:forward strand
Alignment:WMTRCTGCCACCW
CCAACTGCCA---
 C G A T G T A C A C G T C T A G A G T C A C G T A C T G A G T C A G T C C G T A A T G C A G T C G C A T
A G T C G A T C C G T A C T G A A G T C C G A T A C T G G A T C G T A C G C T A A C G T A C G T A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:8
Score:0.59
Offset:5
Orientation:forward strand
Alignment:WMTRCTGCCACCW
-----TGTCANYT
 C G A T G T A C A C G T C T A G A G T C A C G T A C T G A G T C A G T C C G T A A T G C A G T C G C A T
A C G T A C G T A C G T A C G T A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T

ZBTB7C/MA0695.1/Jaspar

Match Rank:9
Score:0.59
Offset:3
Orientation:forward strand
Alignment:WMTRCTGCCACCW--
---GCGACCACCGAA
 C G A T G T A C A C G T C T A G A G T C A C G T A C T G A G T C A G T C C G T A A T G C A G T C G C A T A C G T A C G T
A C G T A C G T A C G T C T A G T A G C C T A G G T C A G T A C A G T C G T C A G T A C G A T C T C A G G T C A T G C A

NFIX/MA0671.1/Jaspar

Match Rank:10
Score:0.59
Offset:3
Orientation:forward strand
Alignment:WMTRCTGCCACCW
---CGTGCCAAG-
 C G A T G T A C A C G T C T A G A G T C A C G T A C T G A G T C A G T C C G T A A T G C A G T C G C A T
A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T