Information for 5-GATGGCAGCA (Motif 2)

A T C G T C G A A C G T C T A G A T C G G T A C C G T A T C A G A T G C C G T A
Reverse Opposite:
A C G T A T C G A G T C C G A T A C T G A T G C A G T C G T C A A G C T A T G C
p-value:1e-27
log p-value:-6.408e+01
Information Content per bp:1.837
Number of Target Sequences with motif50.0
Percentage of Target Sequences with motif5.84%
Number of Background Sequences with motif348.7
Percentage of Background Sequences with motif0.73%
Average Position of motif in Targets50.7 +/- 23.2bp
Average Position of motif in Background47.5 +/- 32.5bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1(Zf)/Promoter/Homer

Match Rank:1
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---GATGGCAGCA
CAAGATGGCGGC-
 A C G T A C G T A C G T A T C G T C G A A C G T C T A G A T C G G T A C C G T A T C A G A T G C C G T A
T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C A C G T

Hic1/MA0739.1/Jaspar

Match Rank:2
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GATGGCAGCA
GGTTGGCAT--
 A C G T A T C G T C G A A C G T C T A G A T C G G T A C C G T A T C A G A T G C C G T A
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:3
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GATGGCAGCA
TNNGGGCAG--
 A C G T A T C G T C G A A C G T C T A G A T C G G T A C C G T A T C A G A T G C C G T A
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T

YY1/MA0095.2/Jaspar

Match Rank:4
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---GATGGCAGCA
CAAGATGGCGGC-
 A C G T A C G T A C G T A T C G T C G A A C G T C T A G A T C G G T A C C G T A T C A G A T G C C G T A
T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C A C G T

NRL/MA0842.1/Jaspar

Match Rank:5
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:GATGGCAGCA----
---GTCAGCANNTN
 A T C G T C G A A C G T C T A G A T C G G T A C C G T A T C A G A T G C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:6
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GATGGCAGCA--
SCTGTCARCACC
 A T C G T C G A A C G T C T A G A T C G G T A C C G T A T C A G A T G C C G T A A C G T A C G T
T A G C G A T C C G A T C A T G G C A T A G T C G T C A C T G A A G T C C T G A T A G C A G T C

PB0029.1_Hic1_1/Jaspar

Match Rank:7
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----GATGGCAGCA-
NGTAGGTTGGCATNNN
 A C G T A C G T A C G T A C G T A C G T A T C G T C G A A C G T C T A G A T C G G T A C C G T A T C A G A T G C C G T A A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

PB0041.1_Mafb_1/Jaspar

Match Rank:8
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GATGGCAGCA-----
NCTANGTCAGCAAATTT
 A C G T A C G T A T C G T C G A A C G T C T A G A T C G G T A C C G T A T C A G A T G C C G T A A C G T A C G T A C G T A C G T A C G T
C A G T G A T C A G C T C G T A G C T A T C A G A C G T G T A C C G T A C A T G G A T C C G T A G T C A C G T A G C A T G A C T C G A T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GATGGCAGCA
CTTGGCAA--
 A T C G T C G A A C G T C T A G A T C G G T A C C G T A T C A G A T G C C G T A
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:10
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GATGGCAGCA---
ADGGYAGYAGCATCT
 A C G T A C G T A T C G T C G A A C G T C T A G A T C G G T A C C G T A T C A G A T G C C G T A A C G T A C G T A C G T
C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T