Information for 11-AATTTTAAAA (Motif 12)

G C T A C G T A C G A T C A G T A C G T G A C T C T G A G T C A C T G A G C T A
Reverse Opposite:
C G A T G A C T C A G T G A C T C T G A T C G A G T C A C G T A G C A T C G A T
p-value:1e-7
log p-value:-1.805e+01
Information Content per bp:1.688
Number of Target Sequences with motif43.0
Percentage of Target Sequences with motif5.16%
Number of Background Sequences with motif921.9
Percentage of Background Sequences with motif1.94%
Average Position of motif in Targets46.3 +/- 29.1bp
Average Position of motif in Background49.5 +/- 29.8bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-AATTTTAAAA
CGGTTTCAAA-
 A C G T G C T A C G T A C G A T C A G T A C G T G A C T C T G A G T C A C T G A G C T A
T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T

LIN54/MA0619.1/Jaspar

Match Rank:2
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:AATTTTAAAA
-NATTCAAAT
 G C T A C G T A C G A T C A G T A C G T G A C T C T G A G T C A C T G A G C T A
A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T

PB0145.1_Mafb_2/Jaspar

Match Rank:3
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AATTTTAAAA----
CAATTGCAAAAATAT
 A C G T G C T A C G T A C G A T C A G T A C G T G A C T C T G A G T C A C T G A G C T A A C G T A C G T A C G T A C G T
G T A C T C G A C G T A A C G T A C G T A C T G G A T C C T G A C G T A G C T A C G T A C G T A G C A T C T G A G C A T

PB0187.1_Tcf7_2/Jaspar

Match Rank:4
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--AATTTTAAAA---
NNNTTTNTAATACNG
 A C G T A C G T G C T A C G T A C G A T C A G T A C G T G A C T C T G A G T C A C T G A G C T A A C G T A C G T A C G T
C G A T C A G T C T A G C A G T C A G T C G A T T G C A A G C T G T C A C G T A C G A T C G T A G T A C T C A G C A T G

HOXD11/MA0908.1/Jaspar

Match Rank:5
Score:0.62
Offset:1
Orientation:forward strand
Alignment:AATTTTAAAA-
-GTCGTAAAAA
 G C T A C G T A C G A T C A G T A C G T G A C T C T G A G T C A C T G A G C T A A C G T
A C G T T C A G A C G T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C T A

Arid5a/MA0602.1/Jaspar

Match Rank:6
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AATTTTAAAA--
CTAATATTGCTAAA
 A C G T A C G T G C T A C G T A C G A T C A G T A C G T G A C T C T G A G T C A C T G A G C T A A C G T A C G T
T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

PB0002.1_Arid5a_1/Jaspar

Match Rank:7
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AATTTTAAAA--
CTAATATTGCTAAA
 A C G T A C G T G C T A C G T A C G A T C A G T A C G T G A C T C T G A G T C A C T G A G C T A A C G T A C G T
T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

PB0148.1_Mtf1_2/Jaspar

Match Rank:8
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AATTTTAAAA---
AAATAAGAAAAAAC
 A C G T G C T A C G T A C G A T C A G T A C G T G A C T C T G A G T C A C T G A G C T A A C G T A C G T A C G T
G C T A C G T A G C T A C A G T G C T A G C T A C A T G G T C A G C T A G C T A G C T A T G C A C G T A T G A C

HOXD12/MA0873.1/Jaspar

Match Rank:9
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AATTTTAAAA-
AGTCGTAAAAA
 G C T A C G T A C G A T C A G T A C G T G A C T C T G A G T C A C T G A G C T A A C G T
T C G A T C A G A G C T T A G C T C A G G A C T C G T A C T G A C G T A G C T A G T C A

PH0068.1_Hoxc13/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-AATTTTAAAA-----
NAATTTTACGAGNTNN
 A C G T G C T A C G T A C G A T C A G T A C G T G A C T C T G A G T C A C T G A G C T A A C G T A C G T A C G T A C G T A C G T
G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T