Information for 4-ACAGAGGTCAGTC (Motif 4)

G C T A G T A C C G T A A T C G T C G A C T A G A T C G C A G T T A G C C G T A A C T G G A C T A T G C
Reverse Opposite:
T A C G C T G A T G A C C G A T A T C G G T C A T A G C G A T C A G C T T A G C G C A T A C T G C G A T
p-value:1e-20
log p-value:-4.639e+01
Information Content per bp:1.582
Number of Target Sequences with motif113.0
Percentage of Target Sequences with motif13.61%
Number of Background Sequences with motif2418.5
Percentage of Background Sequences with motif5.10%
Average Position of motif in Targets48.6 +/- 27.9bp
Average Position of motif in Background49.2 +/- 28.9bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.75
Offset:1
Orientation:forward strand
Alignment:ACAGAGGTCAGTC
-CAAAGGTCAG--
 G C T A G T A C C G T A A T C G T C G A C T A G A T C G C A G T T A G C C G T A A C T G G A C T A T G C
A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:2
Score:0.73
Offset:2
Orientation:forward strand
Alignment:ACAGAGGTCAGTC
--AGRGGTCA---
 G C T A G T A C C G T A A T C G T C G A C T A G A T C G C A G T T A G C C G T A A C T G G A C T A T G C
A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T

PB0118.1_Esrra_2/Jaspar

Match Rank:3
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--ACAGAGGTCAGTC--
GGCGAGGGGTCAAGGGC
 A C G T A C G T G C T A G T A C C G T A A T C G T C G A C T A G A T C G C A G T T A G C C G T A A C T G G A C T A T G C A C G T A C G T
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:4
Score:0.67
Offset:2
Orientation:forward strand
Alignment:ACAGAGGTCAGTC
--TRAGGTCA---
 G C T A G T A C C G T A A T C G T C G A C T A G A T C G C A G T T A G C C G T A A C T G G A C T A T G C
A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:5
Score:0.66
Offset:1
Orientation:forward strand
Alignment:ACAGAGGTCAGTC-
-CAAAGGTCAAGGG
 G C T A G T A C C G T A A T C G T C G A C T A G A T C G C A G T T A G C C G T A A C T G G A C T A T G C A C G T
A C G T G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:6
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----ACAGAGGTCAGTC
GAGGTCAAAGGTCA---
 A C G T A C G T A C G T A C G T G C T A G T A C C G T A A T C G T C G A C T A G A T C G C A G T T A G C C G T A A C T G G A C T A T G C
T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A A C G T A C G T A C G T

NR2C2/MA0504.1/Jaspar

Match Rank:7
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----ACAGAGGTCAGTC
AGGGGTCAGAGGTCA---
 A C G T A C G T A C G T A C G T A C G T G C T A G T A C C G T A A T C G T C G A C T A G A T C G C A G T T A G C C G T A A C T G G A C T A T G C
T G C A T C A G T C A G A C T G C A T G C A G T A T G C C T G A C T A G C T G A C T A G C A T G A C G T A G T C C T G A A C G T A C G T A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:8
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----ACAGAGGTCAGTC
TAGGGCAAAGGTCA---
 A C G T A C G T A C G T A C G T G C T A G T A C C G T A A T C G T C G A C T A G A T C G C A G T T A G C C G T A A C T G G A C T A T G C
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A A C G T A C G T A C G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:9
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----ACAGAGGTCAGTC
GTAGGGCAAAGGTCA---
 A C G T A C G T A C G T A C G T A C G T G C T A G T A C C G T A A T C G T C G A C T A G A T C G C A G T T A G C C G T A A C T G G A C T A T G C
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T A C G T A C G T

PKNOX1/MA0782.1/Jaspar

Match Rank:10
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--ACAGAGGTCAGTC
TGACAGGTGTCA---
 A C G T A C G T G C T A G T A C C G T A A T C G T C G A C T A G A T C G C A G T T A G C C G T A A C T G G A C T A T G C
G A C T T A C G C T G A G T A C C T G A C A T G T A C G A G C T T C A G G C A T T A G C C G T A A C G T A C G T A C G T