Information for 5-AGAGAGCGCCCTCTAG (Motif 3)

G T C A A C T G G T C A A T C G T C G A C T A G A T G C A T C G G T A C A G T C A G T C A C G T A G T C A G C T C G T A A C T G
Reverse Opposite:
G T A C A C G T C T G A A C T G C G T A A C T G A C T G A C T G A T G C A T C G G A T C A G C T A T G C A C G T A G T C A C G T
p-value:1e-13
log p-value:-3.084e+01
Information Content per bp:1.824
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets52.8 +/- 11.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.55
Offset:2
Orientation:forward strand
Alignment:AGAGAGCGCCCTCTAG------
--ANAGTGCCACCTGGTGGCCA
 G T C A A C T G G T C A A T C G T C G A C T A G A T G C A T C G G T A C A G T C A G T C A C G T A G T C A G C T C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

PB0052.1_Plagl1_1/Jaspar

Match Rank:2
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-AGAGAGCGCCCTCTAG
NNNGGGGCGCCCCCNN-
 A C G T G T C A A C T G G T C A A T C G T C G A C T A G A T G C A T C G G T A C A G T C A G T C A C G T A G T C A G C T C G T A A C T G
A T G C A G C T T G C A C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C G A T C C T G A T G C A A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.54
Offset:0
Orientation:forward strand
Alignment:AGAGAGCGCCCTCTAG----
CNNBRGCGCCCCCTGSTGGC
 G T C A A C T G G T C A A T C G T C G A C T A G A T G C A T C G G T A C A G T C A G T C A C G T A G T C A G C T C G T A A C T G A C G T A C G T A C G T A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

POL006.1_BREu/Jaspar

Match Rank:4
Score:0.52
Offset:2
Orientation:forward strand
Alignment:AGAGAGCGCCCTCTAG
--AGCGCGCC------
 G T C A A C T G G T C A A T C G T C G A C T A G A T G C A T C G G T A C A G T C A G T C A C G T A G T C A G C T C G T A A C T G
A C G T A C G T T G C A T A C G T A G C T C A G T G A C A C T G A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T

CTCF/MA0139.1/Jaspar

Match Rank:5
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:AGAGAGCGCCCTCTAG------
---TAGCGCCCCCTGGTGGCCA
 G T C A A C T G G T C A A T C G T C G A C T A G A T G C A T C G G T A C A G T C A G T C A C G T A G T C A G C T C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

Klf12/MA0742.1/Jaspar

Match Rank:6
Score:0.52
Offset:1
Orientation:forward strand
Alignment:AGAGAGCGCCCTCTAG
-GACCACGCCCTTATT
 G T C A A C T G G T C A A T C G T C G A C T A G A T G C A T C G G T A C A G T C A G T C A C G T A G T C A G C T C G T A A C T G
A C G T C A T G T C G A G T A C T A G C T G C A G T A C C T A G A G T C A G T C A G T C G C A T G C A T G C T A G C A T G C A T

PB0076.1_Sp4_1/Jaspar

Match Rank:7
Score:0.51
Offset:1
Orientation:forward strand
Alignment:AGAGAGCGCCCTCTAG--
-GGTCCCGCCCCCTTCTC
 G T C A A C T G G T C A A T C G T C G A C T A G A T G C A T C G G T A C A G T C A G T C A C G T A G T C A G C T C G T A A C T G A C G T A C G T
A C G T A C T G C A T G G A C T G T A C G T A C A G T C C T A G A G T C A T G C A G T C G T A C A G T C G A C T G A C T T A G C A G C T A G T C

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:8
Score:0.50
Offset:2
Orientation:forward strand
Alignment:AGAGAGCGCCCTCTAG---
--CATAAGACCACCATTAC
 G T C A A C T G G T C A A T C G T C G A C T A G A T G C A T C G G T A C A G T C A G T C A C G T A G T C A G C T C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A G T C C G A T C A G T C T G A T G C A A C T G G T C A G A T C A T G C G T C A G A T C G A T C G C T A A C G T C A G T C T G A A G C T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:9
Score:0.50
Offset:6
Orientation:reverse strand
Alignment:AGAGAGCGCCCTCTAG
------NSCACTYVAV
 G T C A A C T G G T C A A T C G T C G A C T A G A T G C A T C G G T A C A G T C A G T C A C G T A G T C A G C T C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G

ZBTB7A/MA0750.1/Jaspar

Match Rank:10
Score:0.50
Offset:4
Orientation:forward strand
Alignment:AGAGAGCGCCCTCTAG
----GGCGACCACCGA
 G T C A A C T G G T C A A T C G T C G A C T A G A T G C A T C G G T A C A G T C A G T C A C G T A G T C A G C T C G T A A C T G
A C G T A C G T A C G T A C G T A C T G T C A G A T G C C T A G G T C A A G T C A T G C G T C A A G T C G T A C C A T G T G C A