Information for 9-GCRTAGCACCAGG (Motif 7)

C T A G A T G C C T G A A G C T C G T A A C T G A T G C C T G A A G T C A G T C T G C A C T A G A C T G
Reverse Opposite:
A G T C A G T C A C G T A C T G C T A G A G C T A T C G A G T C A C G T T C G A G A C T A T C G A G T C
p-value:1e-10
log p-value:-2.501e+01
Information Content per bp:1.769
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets42.6 +/- 15.9bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:1
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GCRTAGCACCAGG
CCGCATAGCAACGGA
 A C G T A C G T C T A G A T G C C T G A A G C T C G T A A C T G A T G C C T G A A G T C A G T C T G C A C T A G A C T G
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GCRTAGCACCAGG
SCCTAGCAACAG-
 C T A G A T G C C T G A A G C T C G T A A C T G A T G C C T G A A G T C A G T C T G C A C T A G A C T G
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:3
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GCRTAGCACCAGG
TACCATAGCAACGGT
 A C G T A C G T C T A G A T G C C T G A A G C T C G T A A C T G A T G C C T G A A G T C A G T C T G C A C T A G A C T G
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

PB0054.1_Rfx3_1/Jaspar

Match Rank:4
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------GCRTAGCACCAGG----
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G A T G C C T G A A G C T C G T A A C T G A T G C C T G A A G T C A G T C T G C A C T A G A C T G A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:5
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----GCRTAGCACCAGG
TGTTKCCTAGCAACM--
 A C G T A C G T A C G T A C G T C T A G A T G C C T G A A G C T C G T A A C T G A T G C C T G A A G T C A G T C T G C A C T A G A C T G
C A G T T C A G A G C T G A C T A C G T A G T C G A T C G A C T C T G A A C T G G A T C C G T A C T G A A G T C G T A C A C G T A C G T

ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----GCRTAGCACCAGG---
YCAGGCWCAGTACCAGGCTC
 A C G T A C G T A C G T A C G T C T A G A T G C C T G A A G C T C G T A A C T G A T G C C T G A A G T C A G T C T G C A C T A G A C T G A C G T A C G T A C G T
A G T C T G A C G C T A C T A G C T A G G A T C G C A T A T G C C G T A C T A G C A G T T C G A A T G C A G T C C G T A C A T G C T A G G T A C G A C T A T G C

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:7
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:GCRTAGCACCAGG---------
--TCAGCACCATGGACAGCTCC
 C T A G A T G C C T G A A G C T C G T A A C T G A T G C C T G A A G T C A G T C T G C A C T A G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A G C T G A T C C T G A T C A G T A G C C T G A A T G C G A T C G C T A G A C T C T A G C T A G G T C A A T G C C G T A T C A G G T A C C A G T T A G C G A T C

REST/MA0138.2/Jaspar

Match Rank:8
Score:0.51
Offset:1
Orientation:forward strand
Alignment:GCRTAGCACCAGG---------
-TTCAGCACCATGGACAGCGCC
 C T A G A T G C C T G A A G C T C G T A A C T G A T G C C T G A A G T C A G T C T G C A C T A G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C

SCRT2/MA0744.1/Jaspar

Match Rank:9
Score:0.51
Offset:3
Orientation:forward strand
Alignment:GCRTAGCACCAGG---
---ATGCAACAGGTGG
 C T A G A T G C C T G A A G C T C G T A A C T G A T G C C T G A A G T C A G T C T G C A C T A G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T T C G A G C A T A C T G G T A C T G C A C G T A G T A C G T C A T C A G A T C G G C A T C A T G A T C G

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.51
Offset:-3
Orientation:reverse strand
Alignment:---GCRTAGCACCAGG
TTGGCANNNTGCCAAG
 A C G T A C G T A C G T C T A G A T G C C T G A A G C T C G T A A C T G A T G C C T G A A G T C A G T C T G C A C T A G A C T G
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G