Information for 3-CATTCATADGGTTTCT (Motif 2)

A G T C C G T A A G C T A G C T A G T C C T G A C G A T C G T A C A T G C T A G A C T G A G C T A G C T A C G T G A T C A C G T
Reverse Opposite:
C G T A C T A G C G T A C T G A C T G A A G T C A G T C G A T C A C G T G C T A A G C T T C A G T C G A C T G A A C G T A C T G
p-value:1e-49
log p-value:-1.147e+02
Information Content per bp:1.784
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif5.68%
Number of Background Sequences with motif22.5
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets51.2 +/- 25.3bp
Average Position of motif in Background54.5 +/- 34.5bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0170.1_Sox17_2/Jaspar

Match Rank:1
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----CATTCATADGGTTTCT
GACCACATTCATACAAT----
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A G C T A G C T A G T C C T G A C G A T C G T A C A T G C T A G A C T G A G C T A G C T A C G T G A T C A C G T
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T A C G T A C G T A C G T A C G T

HLTF/MA0109.1/Jaspar

Match Rank:2
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:CATTCATADGGTTTCT
---NNATAAGGNN---
 A G T C C G T A A G C T A G C T A G T C C T G A C G A T C G T A C A T G C T A G A C T G A G C T A G C T A C G T G A T C A C G T
A C G T A C G T A C G T C G T A A C G T G T C A G C A T C G T A C G T A A C T G A C T G C G A T G C A T A C G T A C G T A C G T

Foxq1/MA0040.1/Jaspar

Match Rank:3
Score:0.51
Offset:6
Orientation:forward strand
Alignment:CATTCATADGGTTTCT-
------TATTGTTTATT
 A G T C C G T A A G C T A G C T A G T C C T G A C G A T C G T A C A T G C T A G A C T G A G C T A G C T A C G T G A T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T C T G A G C A T C G A T A C T G A C G T A C G T A C G T C T G A A C G T C G A T

Neurog1/MA0623.1/Jaspar

Match Rank:4
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:CATTCATADGGTTTCT
--ACCATATGGT----
 A G T C C G T A A G C T A G C T A G T C C T G A C G A T C G T A C A T G C T A G A C T G A G C T A G C T A C G T G A T C A C G T
A C G T A C G T T C G A T G A C G T A C C T G A A C G T T G C A G A C T A C T G A T C G G A C T A C G T A C G T A C G T A C G T

NEUROD2/MA0668.1/Jaspar

Match Rank:5
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:CATTCATADGGTTTCT
--ACCATATGGC----
 A G T C C G T A A G C T A G C T A G T C C T G A C G A T C G T A C A T G C T A G A C T G A G C T A G C T A C G T G A T C A C G T
A C G T A C G T C T G A T G A C G T A C C T G A A C G T C T G A G A C T A T C G A C T G A G T C A C G T A C G T A C G T A C G T

BHLHE23/MA0817.1/Jaspar

Match Rank:6
Score:0.51
Offset:1
Orientation:forward strand
Alignment:CATTCATADGGTTTCT
-AAACATATGTTT---
 A G T C C G T A A G C T A G C T A G T C C T G A C G A T C G T A C A T G C T A G A C T G A G C T A G C T A C G T G A T C A C G T
A C G T C G T A T C G A T G C A G T A C C T G A A G C T T G C A G A C T A C T G A C G T G A C T C G A T A C G T A C G T A C G T

OLIG2/MA0678.1/Jaspar

Match Rank:7
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:CATTCATADGGTTTCT
--ACCATATGGT----
 A G T C C G T A A G C T A G C T A G T C C T G A C G A T C G T A C A T G C T A G A C T G A G C T A G C T A C G T G A T C A C G T
A C G T A C G T C T G A T G A C G T A C C T G A A C G T C G T A G A C T A C T G A C T G G A C T A C G T A C G T A C G T A C G T

PB0028.1_Hbp1_1/Jaspar

Match Rank:8
Score:0.51
Offset:-6
Orientation:reverse strand
Alignment:------CATTCATADGGTTTCT
NNCATTCATTCATNNN------
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A G C T A G C T A G T C C T G A C G A T C G T A C A T G C T A G A C T G A G C T A G C T A C G T G A T C A C G T
T C G A G A C T G T A C C G T A A G C T G A C T T G A C C G T A C G A T G C A T A T G C C G T A C G A T G C T A A C T G C G A T A C G T A C G T A C G T A C G T A C G T A C G T

OLIG3/MA0827.1/Jaspar

Match Rank:9
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:CATTCATADGGTTTCT
--ANCATATGGT----
 A G T C C G T A A G C T A G C T A G T C C T G A C G A T C G T A C A T G C T A G A C T G A G C T A G C T A C G T G A T C A C G T
A C G T A C G T C T G A T G C A G T A C C T G A A C G T T G C A G A C T C A T G A C T G A G C T A C G T A C G T A C G T A C G T

BHLHE22/MA0818.1/Jaspar

Match Rank:10
Score:0.50
Offset:2
Orientation:reverse strand
Alignment:CATTCATADGGTTTCT
--ANCATATGGT----
 A G T C C G T A A G C T A G C T A G T C C T G A C G A T C G T A C A T G C T A G A C T G A G C T A G C T A C G T G A T C A C G T
A C G T A C G T C T G A T C G A T G A C C T G A A C G T C T G A G A C T A C T G A C T G A G C T A C G T A C G T A C G T A C G T