Information for 6-TGTCCTGCTTGAG (Motif 10)

A C G T A C T G C G A T A T G C A G T C A C G T A T C G A G T C A C G T A C G T A C T G C T G A A T C G
Reverse Opposite:
A T G C A G C T G T A C C G T A C G T A A C T G A T G C C G T A A C T G A T C G C G T A A G T C C G T A
p-value:1e-12
log p-value:-2.979e+01
Information Content per bp:1.845
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.17%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets47.2 +/- 26.9bp
Average Position of motif in Background63.1 +/- 20.8bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:1
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TGTCCTGCTTGAG
TGACCTARTT---
 A C G T A C T G C G A T A T G C A G T C A C G T A T C G A G T C A C G T A C G T A C T G C T G A A T C G
A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:2
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TGTCCTGCTTGAG
TGACCTTGAT---
 A C G T A C T G C G A T A T G C A G T C A C G T A T C G A G T C A C G T A C G T A C T G C T G A A T C G
A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T A C G T A C G T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:3
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TGTCCTGCTTGAG
TTGACCTANTTATN
 A C G T A C G T A C T G C G A T A T G C A G T C A C G T A T C G A G T C A C G T A C G T A C T G C T G A A T C G
A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:4
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TGTCCTGCTTGAG
TGACCTYA-----
 A C G T A C T G C G A T A T G C A G T C A C G T A T C G A G T C A C G T A C G T A C T G C T G A A T C G
A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TGTCCTGCTTGAG
GTGACCTT------
 A C G T A C G T A C T G C G A T A T G C A G T C A C G T A T C G A G T C A C G T A C G T A C T G C T G A A T C G
A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:6
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TGTCCTGCTTGAG
TGACCT-------
 A C G T A C T G C G A T A T G C A G T C A C G T A T C G A G T C A C G T A C G T A C T G C T G A A T C G
A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TGTCCTGCTTGAG
CNGTCCTCCC----
 A C G T A C G T A C T G C G A T A T G C A G T C A C G T A T C G A G T C A C G T A C G T A C T G C T G A A T C G
A T G C T C G A T A C G A C G T A T G C A G T C A C G T A G T C A G T C G A T C A C G T A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:8
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:TGTCCTGCTTGAG
TGACCYCT-----
 A C G T A C T G C G A T A T G C A G T C A C G T A T C G A G T C A C G T A C G T A C T G C T G A A T C G
A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T A C G T A C G T A C G T A C G T A C G T

VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer

Match Rank:9
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---TGTCCTGCTTGAG----
NNNTGAACTCNNTGACCTCN
 A C G T A C G T A C G T A C G T A C T G C G A T A T G C A G T C A C G T A T C G A G T C A C G T A C G T A C T G C T G A A T C G A C G T A C G T A C G T A C G T
G T A C G A T C G T C A G C A T T C A G G T C A G T C A G T A C A G C T A G T C C G T A T A C G G C A T T A C G T G C A G T A C G A T C G A C T A G T C G A C T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:TGTCCTGCTTGAG---
NGTCACGCTTGGCTGC
 A C G T A C T G C G A T A T G C A G T C A C G T A T C G A G T C A C G T A C G T A C T G C T G A A T C G A C G T A C G T A C G T
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C