Information for 17-AGGGATWTAAAAT (Motif 23)

G T C A C T A G C T A G A T C G C G T A C G A T G C T A C A G T G T C A C T G A G T C A G T C A A G C T
Reverse Opposite:
C T G A C A G T C A G T A G C T A C G T G T C A C G A T G C T A C G A T A T G C G A T C G A T C A C G T
p-value:1e-13
log p-value:-2.994e+01
Information Content per bp:1.692
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.31%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets53.2 +/- 28.2bp
Average Position of motif in Background27.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0137.1_Pitx1/Jaspar

Match Rank:1
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----AGGGATWTAAAAT
TTAGAGGGATTAACAAT
 A C G T A C G T A C G T A C G T G T C A C T A G C T A G A T C G C G T A C G A T G C T A C A G T G T C A C T G A G T C A G T C A A G C T
G A C T A C G T T C G A C T A G C T G A T C A G C T A G C A T G G T C A A C G T G A C T C G T A C T G A G T A C C T G A G T C A G C A T

PH0013.1_Cdx2/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AGGGATWTAAAAT--
AAAGGTAATAAAATTT
 A C G T G T C A C T A G C T A G A T C G C G T A C G A T G C T A C A G T G T C A C T G A G T C A G T C A A G C T A C G T A C G T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T

PH0012.1_Cdx1/Jaspar

Match Rank:3
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AGGGATWTAAAAT--
TAAGGTAATAAAATTA
 A C G T G T C A C T A G C T A G A T C G C G T A C G A T G C T A C A G T G T C A C T G A G T C A G T C A A G C T A C G T A C G T
C G A T C T G A T G C A C T A G T C A G G A C T G T C A C T G A C G A T G C T A C G T A G C T A G C T A A G C T C A G T G C T A

PH0075.1_Hoxd10/Jaspar

Match Rank:4
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AGGGATWTAAAAT----
AATGCAATAAAATTTAT
 G T C A C T A G C T A G A T C G C G T A C G A T G C T A C A G T G T C A C T G A G T C A G T C A A G C T A C G T A C G T A C G T A C G T
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T

LIN54/MA0619.1/Jaspar

Match Rank:5
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:AGGGATWTAAAAT
---NATTCAAAT-
 G T C A C T A G C T A G A T C G C G T A C G A T G C T A C A G T G T C A C T G A G T C A G T C A A G C T
A C G T A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AGGGATWTAAAAT---
AGAGCCATAAAATTCG
 G T C A C T A G C T A G A T C G C G T A C G A T G C T A C A G T G T C A C T G A G T C A G T C A A G C T A C G T A C G T A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

PH0125.1_Obox5_2/Jaspar

Match Rank:7
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---AGGGATWTAAAAT-
NANAGGGATTAATTATN
 A C G T A C G T A C G T G T C A C T A G C T A G A T C G C G T A C G A T G C T A C A G T G T C A C T G A G T C A G T C A A G C T A C G T
T C G A C T G A T C A G T C G A T C A G T C A G A C T G G C T A A C G T C G A T C G T A C G T A G C A T G A C T T C G A G C A T T G A C

PH0056.1_Hoxa9/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AGGGATWTAAAAT----
ACGGCCATAAAATTAAT
 G T C A C T A G C T A G A T C G C G T A C G A T G C T A C A G T G T C A C T G A G T C A G T C A A G C T A C G T A C G T A C G T A C G T
C T G A T G A C C T A G A T C G G A T C G T A C C T G A C G A T G C T A C G T A C G T A C G T A G C A T C A G T C G T A C T G A C G A T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:9
Score:0.57
Offset:1
Orientation:forward strand
Alignment:AGGGATWTAAAAT
-CGGTTTCAAA--
 G T C A C T A G C T A G A T C G C G T A C G A T G C T A C A G T G T C A C T G A G T C A G T C A A G C T
A C G T T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T A C G T

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:AGGGATWTAAAAT
AAGGATATNTN--
 G T C A C T A G C T A G A T C G C G T A C G A T G C T A C A G T G T C A C T G A G T C A G T C A A G C T
T C G A C G T A C T A G T A C G C G T A A G C T C G T A A C G T A G T C C G A T C G A T A C G T A C G T