Information for 5-TTTAGTCTGT (Motif 13)

A C G T C G A T C G A T C G T A A C T G A C G T A T G C A C G T A T C G A C G T
Reverse Opposite:
C G T A A T G C C G T A T A C G C G T A G T A C C G A T C G T A C G T A G T C A
p-value:1e-9
log p-value:-2.291e+01
Information Content per bp:1.845
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.73%
Number of Background Sequences with motif77.1
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets47.0 +/- 26.7bp
Average Position of motif in Background45.0 +/- 24.6bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.68
Offset:2
Orientation:forward strand
Alignment:TTTAGTCTGT
--TWGTCTGV
 A C G T C G A T C G A T C G T A A C T G A C G T A T G C A C G T A T C G A C G T
A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TTTAGTCTGT
VBSYGTCTGG
 A C G T C G A T C G A T C G T A A C T G A C G T A T G C A C G T A T C G A C G T
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.59
Offset:2
Orientation:forward strand
Alignment:TTTAGTCTGT
--CTGTCTGG
 A C G T C G A T C G A T C G T A A C T G A C G T A T G C A C G T A T C G A C G T
A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

PB0130.1_Gm397_2/Jaspar

Match Rank:4
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TTTAGTCTGT------
NNGCGTGTGTGCNGCN
 A C G T C G A T C G A T C G T A A C T G A C G T A T G C A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C A G T A C G T C T A G T G A C C A T G A C G T T A C G A G C T C A T G A G C T A C T G A G T C A G T C C A T G A G T C G A C T

PB0151.1_Myf6_2/Jaspar

Match Rank:5
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-TTTAGTCTGT----
GGNGCGNCTGTTNNN
 A C G T A C G T C G A T C G A T C G T A A C T G A C G T A T G C A C G T A T C G A C G T A C G T A C G T A C G T A C G T
C T A G A C T G G A C T A T C G A T G C A T C G A C T G G A T C A G C T C T A G A C G T A G C T A C T G A T G C A G C T

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:6
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--TTTAGTCTGT
ACTTTCGTTTCT
 A C G T A C G T A C G T C G A T C G A T C G T A A C T G A C G T A T G C A C G T A T C G A C G T
T G C A A T G C A C G T A C G T A C G T A T G C C T A G A C G T A C G T A G C T G A T C A G C T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:TTTAGTCTGT-----
---TGTCTGDCACCT
 A C G T C G A T C G A T C G T A A C T G A C G T A T G C A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

PB0060.1_Smad3_1/Jaspar

Match Rank:8
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TTTAGTCTGT-----
NNTNNTGTCTGGNNTNG
 A C G T A C G T A C G T C G A T C G A T C G T A A C T G A C G T A T G C A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

POL009.1_DCE_S_II/Jaspar

Match Rank:9
Score:0.55
Offset:5
Orientation:forward strand
Alignment:TTTAGTCTGT-
-----GCTGTG
 A C G T C G A T C G A T C G T A A C T G A C G T A T G C A C G T A T C G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G

POL007.1_BREd/Jaspar

Match Rank:10
Score:0.54
Offset:4
Orientation:forward strand
Alignment:TTTAGTCTGT-
----GTTTGTT
 A C G T C G A T C G A T C G T A A C T G A C G T A T G C A C G T A T C G A C G T A C G T
A C G T A C G T A C G T A C G T C T A G A C G T C A G T A C G T A C T G A C G T A C G T