Information for 10-AATCCAKCCT (Motif 19)

C G T A C T G A A C G T A T G C A G T C C G T A A C T G A G T C G A T C A G C T
Reverse Opposite:
C T G A C T A G A C T G G T A C A C G T A C T G T A C G C G T A A G C T C G A T
p-value:1e-7
log p-value:-1.809e+01
Information Content per bp:1.814
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.12%
Number of Background Sequences with motif177.2
Percentage of Background Sequences with motif0.37%
Average Position of motif in Targets53.9 +/- 28.8bp
Average Position of motif in Background51.4 +/- 25.9bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:1
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--AATCCAKCCT
GYCATCMATCAT
 A C G T A C G T C G T A C T G A A C G T A T G C A G T C C G T A A C T G A G T C G A T C A G C T
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:2
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AATCCAKCCT
TAATCCCN---
 A C G T C G T A C T G A A C G T A T G C A G T C C G T A A C T G A G T C G A T C A G C T
C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G A C G T A C G T A C G T

PB0185.1_Tcf1_2/Jaspar

Match Rank:3
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---AATCCAKCCT-
NNTAATCCNGNCNN
 A C G T A C G T A C G T C G T A C T G A A C G T A T G C A G T C C G T A A C T G A G T C G A T C A G C T A C G T
G A T C G T A C G C A T T G C A G T C A G A C T G T A C A G T C T C A G A T C G C T A G A G T C T G C A C G T A

Pitx1/MA0682.1/Jaspar

Match Rank:4
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--AATCCAKCCT
TTAATCCC----
 A C G T A C G T C G T A C T G A A C G T A T G C A G T C C G T A A C T G A G T C G A T C A G C T
G A C T G C A T T C G A C G T A C A G T G A T C G A T C G T A C A C G T A C G T A C G T A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:5
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---AATCCAKCCT
NYTAATCCYB---
 A C G T A C G T A C G T C G T A C T G A A C G T A T G C A G T C C G T A A C T G A G T C G A T C A G C T
A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T A C G T A C G T A C G T

PITX3/MA0714.1/Jaspar

Match Rank:6
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---AATCCAKCCT
CTTAATCCC----
 A C G T A C G T A C G T C G T A C T G A A C G T A T G C A G T C C G T A A C T G A G T C G A T C A G C T
T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C A C G T A C G T A C G T A C G T

PB0171.1_Sox18_2/Jaspar

Match Rank:7
Score:0.58
Offset:-6
Orientation:reverse strand
Alignment:------AATCCAKCCT
NNNNTGAATTCANNNC
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C T G A A C G T A T G C A G T C C G T A A C T G A G T C G A T C A G C T
A C T G C A T G G A T C G C T A A G C T C T A G G T C A C T G A G A C T C A G T G A T C T C G A T A C G A G C T T G A C G A T C

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:8
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:AATCCAKCCT
ATTGCATCAK
 C G T A C T G A A C G T A T G C A G T C C G T A A C T G A G T C G A T C A G C T
T C G A A C G T A C G T C T A G A G T C T C G A G C A T G T A C C T G A A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:9
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---AATCCAKCCT
GCTAATCC-----
 A C G T A C G T A C G T C G T A C T G A A C G T A T G C A G T C C G T A A C T G A G T C G A T C A G C T
A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T A C G T A C G T A C G T

POL002.1_INR/Jaspar

Match Rank:10
Score:0.57
Offset:3
Orientation:forward strand
Alignment:AATCCAKCCT-
---TCAGTCTT
 C G T A C T G A A C G T A T G C A G T C C G T A A C T G A G T C G A T C A G C T A C G T
A C G T A C G T A C G T C A G T A G T C C G T A A T C G G A C T G A T C A G C T A G C T