Information for 8-MAAGGCAASCMKG (Motif 7)

G T A C C G T A C T G A A C T G A C T G A G T C C G T A C G T A A T G C A G T C G T C A A C T G A T C G
Reverse Opposite:
A T G C G T A C A C G T A C T G A T C G A C G T C G A T A C T G A G T C A G T C A G C T A C G T A C T G
p-value:1e-8
log p-value:-2.035e+01
Information Content per bp:1.873
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.73%
Number of Background Sequences with motif6.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets49.3 +/- 20.3bp
Average Position of motif in Background42.9 +/- 18.6bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.69
Offset:1
Orientation:forward strand
Alignment:MAAGGCAASCMKG
-AAGGCAAGTGT-
 G T A C C G T A C T G A A C T G A C T G A G T C C G T A C G T A A T G C A G T C G T C A A C T G A T C G
A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T

Nr2e1/MA0676.1/Jaspar

Match Rank:2
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-MAAGGCAASCMKG
AAAAGTCAA-----
 A C G T G T A C C G T A C T G A A C T G A C T G A G T C C G T A C G T A A T G C A G T C G T C A A C T G A T C G
G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A A C G T A C G T A C G T A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:3
Score:0.62
Offset:0
Orientation:forward strand
Alignment:MAAGGCAASCMKG
CAAGGHCANV---
 G T A C C G T A C T G A A C T G A C T G A G T C C G T A C G T A A T G C A G T C G T C A A C T G A T C G
T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:4
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:MAAGGCAASCMKG--
SCAGYCADGCATGAC
 G T A C C G T A C T G A A C T G A C T G A G T C C G T A C G T A A T G C A G T C G T C A A C T G A T C G A C G T A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

Nr5a2/MA0505.1/Jaspar

Match Rank:5
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----MAAGGCAASCMKG
AAGTTCAAGGTCAGC---
 A C G T A C G T A C G T A C G T A C G T G T A C C G T A C T G A A C T G A C T G A G T C C G T A C G T A A T G C A G T C G T C A A C T G A T C G
T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C A C G T A C G T A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----MAAGGCAASCMKG
TTGCCATGGCAACC---
 A C G T A C G T A C G T A C G T G T A C C G T A C T G A A C T G A C T G A G T C C G T A C G T A A T G C A G T C G T C A A C T G A T C G
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C A C G T A C G T A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:7
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----MAAGGCAASCMKG
TTGCCATGGCAACN---
 A C G T A C G T A C G T A C G T G T A C C G T A C T G A A C T G A C T G A G T C C G T A C G T A A T G C A G T C G T C A A C T G A T C G
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C A C G T A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:8
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--MAAGGCAASCMKG
BTCAAGGTCA-----
 A C G T A C G T G T A C C G T A C T G A A C T G A C T G A G T C C G T A C G T A A T G C A G T C G T C A A C T G A T C G
A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T A C G T A C G T A C G T A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:9
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--MAAGGCAASCMKG
NTCAAGGTCA-----
 A C G T A C G T G T A C C G T A C T G A A C T G A C T G A G T C C G T A C G T A A T G C A G T C G T C A A C T G A T C G
A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:10
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----MAAGGCAASCMKG
GTTGCCATGGCAAC----
 A C G T A C G T A C G T A C G T A C G T G T A C C G T A C T G A A C T G A C T G A G T C C G T A C G T A A T G C A G T C G T C A A C T G A T C G
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C A C G T A C G T A C G T A C G T