Information for 5-AGACACTGGTGGCTCC (Motif 6)

C G T A C T A G C G T A A T G C C G T A A T G C A C G T A C T G A C T G A C G T A C T G A C T G A G T C A C G T T G A C A G T C
Reverse Opposite:
C T A G A C T G C G T A C T A G A G T C A G T C C G T A A G T C G T A C C G T A A T C G A C G T A T C G A C G T A G T C A C G T
p-value:1e-10
log p-value:-2.531e+01
Information Content per bp:1.912
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.62%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets42.4 +/- 28.5bp
Average Position of motif in Background68.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SCRT1/MA0743.1/Jaspar

Match Rank:1
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:AGACACTGGTGGCTCC
ANCCACCTGTTGCNC-
 C G T A C T A G C G T A A T G C C G T A A T G C A C G T A C T G A C T G A C G T A C T G A C T G A G T C A C G T T G A C A G T C
C T G A T C G A T G A C G T A C T C G A G T A C G A T C A C G T A C T G A C G T C A G T C T A G T G A C C G A T A G T C A C G T

PB0168.1_Sox14_2/Jaspar

Match Rank:2
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---AGACACTGGTGGCTCC
CTCACACAATGGCGC----
 A C G T A C G T A C G T C G T A C T A G C G T A A T G C C G T A A T G C A C G T A C T G A C T G A C G T A C T G A C T G A G T C A C G T T G A C A G T C
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C A C G T A C G T A C G T A C G T

PB0195.1_Zbtb3_2/Jaspar

Match Rank:3
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-AGACACTGGTGGCTCC
CAATCACTGGCAGAAT-
 A C G T C G T A C T A G C G T A A T G C C G T A A T G C A C G T A C T G A C T G A C G T A C T G A C T G A G T C A C G T T G A C A G T C
A G T C G C T A T C G A G C A T G T A C C T G A T G A C C G A T A C T G A C T G A G T C C T G A C T A G G C T A C G T A C G A T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:4
Score:0.53
Offset:0
Orientation:forward strand
Alignment:AGACACTGGTGGCTCC
RAACAATGGN------
 C G T A C T A G C G T A A T G C C G T A A T G C A C G T A C T G A C T G A C G T A C T G A C T G A G T C A C G T T G A C A G T C
C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C A C G T A C G T A C G T A C G T A C G T A C G T

POL013.1_MED-1/Jaspar

Match Rank:5
Score:0.52
Offset:11
Orientation:forward strand
Alignment:AGACACTGGTGGCTCC-
-----------GCTCCG
 C G T A C T A G C G T A A T G C C G T A A T G C A C G T A C T G A C T G A C G T A C T G A C T G A G T C A C G T T G A C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G

Sox6/MA0515.1/Jaspar

Match Rank:6
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-AGACACTGGTGGCTCC
AAAACAATGG-------
 A C G T C G T A C T A G C G T A A T G C C G T A A T G C A C G T A C T G A C T G A C G T A C T G A C T G A G T C A C G T T G A C A G T C
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:7
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-AGACACTGGTGGCTCC
VRAACAATGG-------
 A C G T C G T A C T A G C G T A A T G C C G T A A T G C A C G T A C T G A C T G A C G T A C T G A C T G A G T C A C G T T G A C A G T C
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SCRT2/MA0744.1/Jaspar

Match Rank:8
Score:0.50
Offset:2
Orientation:reverse strand
Alignment:AGACACTGGTGGCTCC
--CCACCTGTTGCAT-
 C G T A C T A G C G T A A T G C C G T A A T G C A C G T A C T G A C T G A C G T A C T G A C T G A G T C A C G T T G A C A G T C
A C G T A C G T T A G C G T A C C G T A A T G C A G T C A C G T C A T G A C G T A C G T A C T G T G A C C G T A A G C T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:9
Score:0.49
Offset:1
Orientation:reverse strand
Alignment:AGACACTGGTGGCTCC
-AACAAAGG-------
 C G T A C T A G C G T A A T G C C G T A A T G C A C G T A C T G A C T G A C G T A C T G A C T G A G T C A C G T T G A C A G T C
A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:10
Score:0.49
Offset:2
Orientation:reverse strand
Alignment:AGACACTGGTGGCTCC
--ACAAAGGNBCCT--
 C G T A C T A G C G T A A T G C C G T A A T G C A C G T A C T G A C T G A C G T A C T G A C T G A G T C A C G T T G A C A G T C
A C G T A C G T G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T A C G T A C G T