Information for 5-AGAGGRCRCTSCA (Motif 4)

C T G A A T C G C T G A C T A G A T C G T C G A G T A C C T G A A G T C G C A T T A C G A G T C T C G A
Reverse Opposite:
A G C T C T A G A T G C C G T A T C A G G A C T A C T G A G C T A T G C A G T C A G C T A T G C A G C T
p-value:1e-17
log p-value:-4.014e+01
Information Content per bp:1.623
Number of Target Sequences with motif36.0
Percentage of Target Sequences with motif4.47%
Number of Background Sequences with motif333.1
Percentage of Background Sequences with motif0.69%
Average Position of motif in Targets56.2 +/- 25.3bp
Average Position of motif in Background50.1 +/- 27.9bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0091.1_Zbtb3_1/Jaspar

Match Rank:1
Score:0.61
Offset:1
Orientation:forward strand
Alignment:AGAGGRCRCTSCA-----
-AATCGCACTGCATTCCG
 C T G A A T C G C T G A C T A G A T C G T C G A G T A C C T G A A G T C G C A T T A C G A G T C T C G A A C G T A C G T A C G T A C G T A C G T
A C G T C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G

HINFP/MA0131.2/Jaspar

Match Rank:2
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-AGAGGRCRCTSCA
NCGCGGACGTTG--
 A C G T C T G A A T C G C T G A C T A G A T C G T C G A G T A C C T G A A G T C G C A T T A C G A G T C T C G A
T G A C G T A C T A C G T A G C C T A G A T C G C G T A T A G C T A C G A G C T A C G T T A C G A C G T A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.58
Offset:-6
Orientation:reverse strand
Alignment:------AGAGGRCRCTSCA-
GCCASCAGGGGGCGCYVNNG
 A C G T A C G T A C G T A C G T A C G T A C G T C T G A A T C G C T G A C T A G A T C G T C G A G T A C C T G A A G T C G C A T T A C G A G T C T C G A A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF/MA0139.1/Jaspar

Match Rank:4
Score:0.57
Offset:-8
Orientation:forward strand
Alignment:--------AGAGGRCRCTSCA
TGGCCACCAGGGGGCGCTA--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A A T C G C T G A C T A G A T C G T C G A G T A C C T G A A G T C G C A T T A C G A G T C T C G A
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A A C G T A C G T

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:5
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:AGAGGRCRCTSCA--
AGATGCTRCTRCCHT
 C T G A A T C G C T G A C T A G A T C G T C G A G T A C C T G A A G T C G C A T T A C G A G T C T C G A A C G T A C G T
C G T A T C A G T G C A C G A T C T A G T G A C G A C T C T A G A G T C G A C T C T A G A G T C G A T C G C T A G A C T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:6
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AGAGGRCRCTSCA
AGRGGTCA-----
 C T G A A T C G C T G A C T A G A T C G T C G A G T A C C T G A A G T C G C A T T A C G A G T C T C G A
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T

PB0118.1_Esrra_2/Jaspar

Match Rank:7
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----AGAGGRCRCTSCA
GGCGAGGGGTCAAGGGC
 A C G T A C G T A C G T A C G T C T G A A T C G C T G A C T A G A T C G T C G A G T A C C T G A A G T C G C A T T A C G A G T C T C G A
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--AGAGGRCRCTSCA
AGGGAAGTCATTTCT
 A C G T A C G T C T G A A T C G C T G A C T A G A T C G T C G A G T A C C T G A A G T C G C A T T A C G A G T C T C G A
C T G A C T A G C T A G T C A G C G T A C T G A C T A G A G C T G T A C C T G A A G C T A G C T A C G T G A T C G A C T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:9
Score:0.55
Offset:-8
Orientation:reverse strand
Alignment:--------AGAGGRCRCTSCA
TGGCCACCAGGTGGCACTNT-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A A T C G C T G A C T A G A T C G T C G A G T A C C T G A A G T C G C A T T A C G A G T C T C G A
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:10
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:AGAGGRCRCTSCA
---GGAAATTCCC
 C T G A A T C G C T G A C T A G A T C G T C G A G T A C C T G A A G T C G C A T T A C G A G T C T C G A
A C G T A C G T A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C