Information for 4-ATCTTATGGC (Motif 3)

G T C A A C G T A G T C A G C T G C A T T C G A A C G T A C T G A C T G G T A C
Reverse Opposite:
A C T G G T A C A G T C C G T A A G C T C G T A C T G A A C T G C G T A A C G T
p-value:1e-18
log p-value:-4.162e+01
Information Content per bp:1.855
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.86%
Number of Background Sequences with motif25.8
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets40.6 +/- 21.0bp
Average Position of motif in Background51.6 +/- 26.5bp
Strand Bias (log2 ratio + to - strand density)2.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0064.1_Hoxb9/Jaspar

Match Rank:1
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---ATCTTATGGC---
NGANTTTTATGGCTCN
 A C G T A C G T A C G T G T C A A C G T A G T C A G C T G C A T T C G A A C G T A C T G A C T G G T A C A C G T A C G T A C G T
G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T

PH0056.1_Hoxa9/Jaspar

Match Rank:2
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----ATCTTATGGC---
ANTAATTTTATGGCCGN
 A C G T A C G T A C G T A C G T G T C A A C G T A G T C A G C T G C A T T C G A A C G T A C T G A C T G G T A C A C G T A C G T A C G T
G C T A G A C T G C A T G C T A C G T A G C A T C G A T C G A T C G A T C G T A G A C T C A T G C T A G T A G C G A T C A C T G G A C T

CDX2/MA0465.1/Jaspar

Match Rank:3
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:ATCTTATGGC--
-TTTTATGGCTN
 G T C A A C G T A G T C A G C T G C A T T C G A A C G T A C T G A C T G G T A C A C G T A C G T
A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer

Match Rank:4
Score:0.65
Offset:0
Orientation:forward strand
Alignment:ATCTTATGGC
RTCATGTGAC
 G T C A A C G T A G T C A G C T G C A T T C G A A C G T A C T G A C T G G T A C
T C A G A G C T A T G C C G T A A G C T T C A G C A G T A C T G C T G A A G T C

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:5
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:ATCTTATGGC
NTTTTATGAC
 G T C A A C G T A G T C A G C T G C A T T C G A A C G T A C T G A C T G G T A C
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C

NEUROD2/MA0668.1/Jaspar

Match Rank:6
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:ATCTTATGGC
ACCATATGGC
 G T C A A C G T A G T C A G C T G C A T T C G A A C G T A C T G A C T G G T A C
C T G A T G A C G T A C C T G A A C G T C T G A G A C T A T C G A C T G A G T C

Mecom/MA0029.1/Jaspar

Match Rank:7
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----ATCTTATGGC
TNTTATCTTATCTT
 A C G T A C G T A C G T A C G T G T C A A C G T A G T C A G C T G C A T T C G A A C G T A C T G A C T G G T A C
A C G T T A C G A G C T C G A T C T G A A C G T A G T C A G C T A C G T C T G A A C G T T A G C G C A T G A C T

YY2/MA0748.1/Jaspar

Match Rank:8
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:ATCTTATGGC----
---TAATGGCGGNC
 G T C A A C G T A G T C A G C T G C A T T C G A A C G T A C T G A C T G G T A C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C

PH0013.1_Cdx2/Jaspar

Match Rank:9
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--ATCTTATGGC----
NAATTTTATTACCNNN
 A C G T A C G T G T C A A C G T A G T C A G C T G C A T T C G A A C G T A C T G A C T G G T A C A C G T A C G T A C G T A C G T
C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T

CDX1/MA0878.1/Jaspar

Match Rank:10
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:ATCTTATGGC
-TTTTATTGC
 G T C A A C G T A G T C A G C T G C A T T C G A A C G T A C T G A C T G G T A C
A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C