Information for 6-GTAACTAAGG (Motif 3)

A T C G A G C T G T C A G T C A A T G C A C G T C G T A C G T A A C T G C T A G
Reverse Opposite:
A G T C A G T C G C A T C G A T C G T A A T C G A C G T A C G T C T G A T A G C
p-value:1e-18
log p-value:-4.204e+01
Information Content per bp:1.782
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.94%
Number of Background Sequences with motif4.2
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets57.1 +/- 24.8bp
Average Position of motif in Background61.3 +/- 18.8bp
Strand Bias (log2 ratio + to - strand density)-1.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HMBOX1/MA0895.1/Jaspar

Match Rank:1
Score:0.79
Offset:-1
Orientation:reverse strand
Alignment:-GTAACTAAGG
GTTAACTAGN-
 A C G T A T C G A G C T G T C A G T C A A T G C A C G T C G T A C G T A A C T G C T A G
A T C G C A G T G C A T C G T A G C T A T A G C G A C T G C T A T C A G A C G T A C G T

PB0159.1_Rfx4_2/Jaspar

Match Rank:2
Score:0.79
Offset:-3
Orientation:reverse strand
Alignment:---GTAACTAAGG--
NNNGTAACTANGNNA
 A C G T A C G T A C G T A T C G A G C T G T C A G T C A A T G C A C G T C G T A C G T A A C T G C T A G A C G T A C G T
A C G T A T G C A T C G A C T G G A C T G T C A C G T A G T A C A G C T G C T A C A T G A T C G T A C G C A G T C G T A

Sox2/MA0143.3/Jaspar

Match Rank:3
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:GTAACTAAGG
--AACAAAGG
 A T C G A G C T G T C A G T C A A T G C A C G T C G T A C G T A A C T G C T A G
A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G

PB0158.1_Rfx3_2/Jaspar

Match Rank:4
Score:0.68
Offset:-7
Orientation:reverse strand
Alignment:-------GTAACTAAGG------
NNTNGNNGTAACCAAGNNNNAGN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G A G C T G T C A G T C A A T G C A C G T C G T A C G T A A C T G C T A G A C G T A C G T A C G T A C G T A C G T A C G T
T A G C G C A T A G C T A G C T A C T G A G C T A C T G C A T G G A C T G T C A G C T A T A G C A G T C C G T A C G T A T A C G A T C G T A C G C G A T T A G C T G C A C T A G A C G T

PB0081.1_Tcf1_1/Jaspar

Match Rank:5
Score:0.68
Offset:-6
Orientation:forward strand
Alignment:------GTAACTAAGG-
ACTTAGTTAACTAAAAA
 A C G T A C G T A C G T A C G T A C G T A C G T A T C G A G C T G T C A G T C A A T G C A C G T C G T A C G T A A C T G C T A G A C G T
T G C A G A T C A G C T G A C T T C G A C T A G G A C T C G A T G C T A C G T A A G T C G A C T C T G A T C G A C T G A G T C A C T G A

PH0167.1_Tcf1/Jaspar

Match Rank:6
Score:0.66
Offset:-6
Orientation:forward strand
Alignment:------GTAACTAAGG-
CCTTAGTTAACTAAAAT
 A C G T A C G T A C G T A C G T A C G T A C G T A T C G A G C T G T C A G T C A A T G C A C G T C G T A C G T A A C T G C T A G A C G T
G A T C A T G C A C G T A G C T T C A G A T C G G A C T G C A T C G T A C G T A A T G C G A C T C T G A T G C A C G T A C T G A A C G T

PH0175.1_Vax2/Jaspar

Match Rank:7
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----GTAACTAAGG-
GTGCACTAATTAAGAC
 A C G T A C G T A C G T A C G T A C G T A T C G A G C T G T C A G T C A A T G C A C G T C G T A C G T A A C T G C T A G A C G T
A C T G C G A T T A C G A T G C T C G A A G T C G A C T G T C A C G T A C G A T A C G T C G T A T C G A A C T G T C G A T A G C

PH0055.1_Hoxa7_2/Jaspar

Match Rank:8
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GTAACTAAGG---
GTAGTAATTAATGGAA
 A C G T A C G T A C G T A T C G A G C T G T C A G T C A A T G C A C G T C G T A C G T A A C T G C T A G A C G T A C G T A C G T
A C T G A C G T T G C A A C T G G C A T G T C A C G T A A C G T C A G T C G T A T G C A A C G T T C A G A T C G G T C A T G C A

PH0011.1_Alx1_2/Jaspar

Match Rank:9
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----GTAACTAAGG--
NNNAATTAATTAANGNG
 A C G T A C G T A C G T A C G T A C G T A T C G A G C T G T C A G T C A A T G C A C G T C G T A C G T A A C T G C T A G A C G T A C G T
A C T G G A T C G A T C T C G A T C G A G A C T G A C T C T G A C G T A G A C T A G C T C T G A C T G A G A C T C A T G A G T C T C A G

PB0071.1_Sox4_1/Jaspar

Match Rank:10
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GTAACTAAGG----
AGAAGAACAAAGGACTA
 A C G T A C G T A C G T A T C G A G C T G T C A G T C A A T G C A C G T C G T A C G T A A C T G C T A G A C G T A C G T A C G T A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A