Information for 12-CAGCTAAGTG (Motif 14)

A G T C C G T A A C T G A G T C A C G T C G T A C G T A A C T G A C G T A C T G
Reverse Opposite:
A G T C C G T A A G T C A C G T A C G T C G T A A C T G A G T C A C G T A C T G
p-value:1e-5
log p-value:-1.282e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.46%
Number of Background Sequences with motif5.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets62.2 +/- 17.4bp
Average Position of motif in Background53.4 +/- 37.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NKX3-2/MA0122.2/Jaspar

Match Rank:1
Score:0.74
Offset:3
Orientation:reverse strand
Alignment:CAGCTAAGTG--
---TTAAGTGGN
 A G T C C G T A A C T G A G T C A C G T C G T A C G T A A C T G A C G T A C T G A C G T A C G T
A C G T A C G T A C G T G A C T C G A T C T G A T C G A C A T G C G A T C T A G A T C G A G C T

Nkx3-1/MA0124.2/Jaspar

Match Rank:2
Score:0.73
Offset:3
Orientation:reverse strand
Alignment:CAGCTAAGTG--
---TTAAGTGGT
 A G T C C G T A A C T G A G T C A C G T C G T A C G T A A C T G A C G T A C T G A C G T A C G T
A C G T A C G T A C G T G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T

ISL2/MA0914.1/Jaspar

Match Rank:3
Score:0.73
Offset:3
Orientation:reverse strand
Alignment:CAGCTAAGTG-
---TTAAGTGC
 A G T C C G T A A C T G A G T C A C G T C G T A C G T A A C T G A C G T A C T G A C G T
A C G T A C G T A C G T G A C T C G A T C T G A G C T A C A T G C G A T C T A G A T G C

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:4
Score:0.70
Offset:3
Orientation:forward strand
Alignment:CAGCTAAGTG-
---CTAATKGV
 A G T C C G T A A C T G A G T C A C G T C G T A C G T A A C T G A C G T A C T G A C G T
A C G T A C G T A C G T A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:5
Score:0.67
Offset:3
Orientation:forward strand
Alignment:CAGCTAAGTG---
---TTRAGTGSYK
 A G T C C G T A A C T G A G T C A C G T C G T A C G T A A C T G A C G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

Barhl1/MA0877.1/Jaspar

Match Rank:6
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CAGCTAAGTG--
--GCTAATTGCT
 A G T C C G T A A C T G A G T C A C G T C G T A C G T A A C T G A C G T A C T G A C G T A C G T
A C G T A C G T A T C G G A T C G C A T C G T A C T G A C G A T A G C T C T A G A T G C A G C T

NKX2-3/MA0672.1/Jaspar

Match Rank:7
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:CAGCTAAGTG--
--NTCAAGTGGN
 A G T C C G T A A C T G A G T C A C G T C G T A C G T A A C T G A C G T A C T G A C G T A C G T
A C G T A C G T A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:8
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CAGCTAAGTG------
NTNNTTAAGTGGNTNAN
 A C G T A G T C C G T A A C T G A G T C A C G T C G T A C G T A A C T G A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
T C G A A G C T A G T C A T G C G C A T C G A T C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G T A C A T G

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:9
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:CAGCTAAGTG---
---TTAAGTGCTT
 A G T C C G T A A C T G A G T C A C G T C G T A C G T A A C T G A C G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T

PH0004.1_Nkx3-2/Jaspar

Match Rank:10
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CAGCTAAGTG------
NTNNTTAAGTGGTTANN
 A C G T A G T C C G T A A C T G A G T C A C G T C G T A C G T A A C T G A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
C T A G C A G T A C G T A T C G G C A T C G A T C T G A C T G A A C T G C G A T C T A G A T C G C G A T A G C T C G T A C G A T A C T G