Information for 9-CCCGAGTGTT (Motif 17)

A T G C A G T C A G T C C T A G G T C A A C T G A C G T T C A G A C G T A C G T
Reverse Opposite:
C G T A T G C A A G T C G T C A A G T C A C G T A G T C C T A G A C T G A T C G
p-value:1e-8
log p-value:-1.847e+01
Information Content per bp:1.849
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.33%
Number of Background Sequences with motif58.9
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets47.8 +/- 26.0bp
Average Position of motif in Background47.0 +/- 26.3bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:1
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CCCGAGTGTT-
-TTRAGTGSYK
 A T G C A G T C A G T C C T A G G T C A A C T G A C G T T C A G A C G T A C G T A C G T
A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:2
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CCCGAGTGTT
CTYRAGTGSY
 A T G C A G T C A G T C C T A G G T C A A C T G A C G T T C A G A C G T A C G T
A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CCCGAGTGTT-
CTTGAGTGGCT
 A T G C A G T C A G T C C T A G G T C A A C T G A C G T T C A G A C G T A C G T A C G T
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

PB0140.1_Irf6_2/Jaspar

Match Rank:4
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CCCGAGTGTT--
NNNACCGAGAGTNNN
 A C G T A C G T A C G T A T G C A G T C A G T C C T A G G T C A A C T G A C G T T C A G A C G T A C G T A C G T A C G T
A T C G G A C T C A T G G T C A A G T C G A T C C T A G T C G A T A C G G T C A C A T G C G A T T C A G T A C G A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CCCGAGTGTT-
-TTGAGTGSTT
 A T G C A G T C A G T C C T A G G T C A A C T G A C G T T C A G A C G T A C G T A C G T
A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

PB0139.1_Irf5_2/Jaspar

Match Rank:6
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---CCCGAGTGTT--
TTGACCGAGAATTCC
 A C G T A C G T A C G T A T G C A G T C A G T C C T A G G T C A A C T G A C G T T C A G A C G T A C G T A C G T A C G T
A G C T G C A T C T A G C G T A G A C T G T A C C T A G C T G A A T C G C G T A C T G A G A C T G A C T A G T C T A G C

PB0138.1_Irf4_2/Jaspar

Match Rank:7
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CCCGAGTGTT--
GNNACCGAGAATNNN
 A C G T A C G T A C G T A T G C A G T C A G T C C T A G G T C A A C T G A C G T T C A G A C G T A C G T A C G T A C G T
A T C G G T A C C T G A G C T A A G T C A G T C C A T G T C G A C A T G G C T A C T G A C G A T T C G A A T G C A G C T

Sox5/MA0087.1/Jaspar

Match Rank:8
Score:0.55
Offset:4
Orientation:forward strand
Alignment:CCCGAGTGTT-
----ATTGTTA
 A T G C A G T C A G T C C T A G G T C A A C T G A C G T T C A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A A C G T A C G T C T A G A G C T G A C T C G A T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:9
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CCCGAGTGTT-
-TTAAGTGCTT
 A T G C A G T C A G T C C T A G G T C A A C T G A C G T T C A G A C G T A C G T A C G T
A C G T A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T

NKX2-8/MA0673.1/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CCCGAGTGTT
NTCAAGTGG-
 A T G C A G T C A G T C C T A G G T C A A C T G A C G T T C A G A C G T A C G T
A G C T C G A T A T G C C T G A C T G A C T A G C A G T C T A G A T C G A C G T