Information for 14-GATTATTCAGASG (Motif 13)

A C T G C G T A C G A T C G A T C G T A A C G T A C G T A G T C C G T A A C T G C T G A A T C G A T C G
Reverse Opposite:
A T G C T A C G A G C T A G T C A C G T A C T G C G T A C G T A C G A T C G T A C G T A A C G T A G T C
p-value:1e-9
log p-value:-2.167e+01
Information Content per bp:1.854
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets42.8 +/- 29.2bp
Average Position of motif in Background53.6 +/- 25.3bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GATTATTCAGASG
GAATATTCAT---
 A C T G C G T A C G A T C G A T C G T A A C G T A C G T A G T C C G T A A C T G C T G A A T C G A T C G
T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T A C G T A C G T A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:2
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GATTATTCAGASG
GHATATKCAT---
 A C T G C G T A C G A T C G A T C G T A A C G T A C G T A G T C C G T A A C T G C T G A A T C G A T C G
C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T A C G T A C G T A C G T

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----GATTATTCAGASG
CTCATGAATATTCAT---
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G A T C G A T C G T A A C G T A C G T A G T C C G T A A C T G C T G A A T C G A T C G
T A G C G A C T G A T C C G T A A C G T T C A G G T C A C G T A A C G T C G T A C G A T A C G T A G T C C G T A C G A T A C G T A C G T A C G T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:4
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---GATTATTCAGASG
ATGCATAATTCA----
 A C G T A C G T A C G T A C T G C G T A C G A T C G A T C G T A A C G T A C G T A G T C C G T A A C T G C T G A A T C G A T C G
G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A A C G T A C G T A C G T A C G T

MF0010.1_Homeobox_class/Jaspar

Match Rank:5
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GATTATTCAGASG
AATTATT------
 A C T G C G T A C G A T C G A T C G T A A C G T A C G T A G T C C G T A A C T G C T G A A T C G A T C G
G C T A G C T A G A C T G A C T C G T A G C A T C G A T A C G T A C G T A C G T A C G T A C G T A C G T

FOS/MA0476.1/Jaspar

Match Rank:6
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GATTATTCAGASG
NATGAGTCANN--
 A C T G C G T A C G A T C G A T C G T A A C G T A C G T A G T C C G T A A C T G C T G A A T C G A T C G
T C G A T C G A A C G T A C T G C G T A T A C G A C G T G T A C C G T A A T G C G T C A A C G T A C G T

Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer

Match Rank:7
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GATTATTCAGASG
NNATGASTCATH--
 A C G T A C T G C G T A C G A T C G A T C G T A A C G T A C G T A G T C C G T A A C T G C T G A A T C G A T C G
A C T G C T A G T C G A C G A T C A T G G C T A A T C G C G A T G T A C G C T A A G C T G T A C A C G T A C G T

FOSL2/MA0478.1/Jaspar

Match Rank:8
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GATTATTCAGASG
GGATGACTCAT---
 A C G T A C T G C G T A C G A T C G A T C G T A A C G T A C G T A G T C C G T A A C T G C T G A A T C G A T C G
A C T G T C A G C T G A A C G T A C T G T C G A A T G C A C G T G T A C C G T A A C G T A C G T A C G T A C G T

AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GATTATTCAGASG
GATGAGTCAT---
 A C T G C G T A C G A T C G A T C G T A A C G T A C G T A G T C C G T A A C T G C T G A A T C G A T C G
T A C G T G C A C G A T C A T G C G T A A T C G C G A T G T A C C G T A A G C T A C G T A C G T A C G T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:10
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GATTATTCAGASG
TCATCAATCA----
 A C G T A C T G C G T A C G A T C G A T C G T A A C G T A C G T A G T C C G T A A C T G C T G A A T C G A T C G
G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A A C G T A C G T A C G T A C G T