Information for 9-GCTGCGAGCA (Motif 9)

A C T G A G T C G A C T A C T G A T G C C T A G C G T A A C T G A G T C G T C A
Reverse Opposite:
A C G T T C A G A G T C C G A T G A T C T A C G A G T C C T G A A C T G A G T C
p-value:1e-9
log p-value:-2.144e+01
Information Content per bp:1.837
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif2.57%
Number of Background Sequences with motif221.6
Percentage of Background Sequences with motif0.46%
Average Position of motif in Targets46.9 +/- 23.6bp
Average Position of motif in Background47.9 +/- 28.6bp
Strand Bias (log2 ratio + to - strand density)1.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0206.1_Zic2_2/Jaspar

Match Rank:1
Score:0.62
Offset:-6
Orientation:reverse strand
Alignment:------GCTGCGAGCA
TCNCCTGCTGNGNNN-
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C G A C T A C T G A T G C C T A G C G T A A C T G A G T C G T C A
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.61
Offset:-6
Orientation:reverse strand
Alignment:------GCTGCGAGCA
TNTCCTGCTGTGNNG-
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C G A C T A C T G A T G C C T A G C G T A A C T G A G T C G T C A
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GCTGCGAGCA
GCTGTG----
 A C T G A G T C G A C T A C T G A T G C C T A G C G T A A C T G A G T C G T C A
T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:4
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GCTGCGAGCA
NGCTN------
 A C G T A C T G A G T C G A C T A C T G A T G C C T A G C G T A A C T G A G T C G T C A
T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T

NHLH1/MA0048.2/Jaspar

Match Rank:5
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----GCTGCGAGCA
CGCAGCTGCG----
 A C G T A C G T A C G T A C G T A C T G A G T C G A C T A C T G A T G C C T A G C G T A A C T G A G T C G T C A
T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G A C G T A C G T A C G T A C G T

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:GCTGCGAGCA---
---GGGAGGACNG
 A C T G A G T C G A C T A C T G A T G C C T A G C G T A A C T G A G T C G T C A A C G T A C G T A C G T
A C G T A C G T A C G T C T A G A C T G A C T G C G T A A C T G A T C G C G T A A T G C A G C T T A C G

PB0207.1_Zic3_2/Jaspar

Match Rank:7
Score:0.58
Offset:-6
Orientation:reverse strand
Alignment:------GCTGCGAGCA
NNTCCTGCTGTGNNN-
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C G A C T A C T G A T G C C T A G C G T A A C T G A G T C G T C A
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:8
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GCTGCGAGCA
CCTGCTGAGH---
 A C G T A C G T A C G T A C T G A G T C G A C T A C T G A T G C C T A G C G T A A C T G A G T C G T C A
A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T A C G T

POL013.1_MED-1/Jaspar

Match Rank:9
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GCTGCGAGCA
GCTCCG----
 A C T G A G T C G A C T A C T G A T G C C T A G C G T A A C T G A G T C G T C A
A C T G A G T C A C G T A G T C A G T C A T C G A C G T A C G T A C G T A C G T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:10
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GCTGCGAGCA
--TGCGTG--
 A C T G A G T C G A C T A C T G A T G C C T A G C G T A A C T G A G T C G T C A
A C G T A C G T G A C T A C T G A G T C A C T G A C G T A C T G A C G T A C G T