Information for 7-CCAAATTKCA (Motif 7)

A T G C A G T C G T C A G T C A G C T A C G A T C A G T A C T G A G T C G T C A
Reverse Opposite:
A C G T A C T G G T A C G T C A G C T A C G A T C A G T A C G T T C A G A T C G
p-value:1e-9
log p-value:-2.239e+01
Information Content per bp:1.713
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif3.31%
Number of Background Sequences with motif352.5
Percentage of Background Sequences with motif0.73%
Average Position of motif in Targets47.7 +/- 23.5bp
Average Position of motif in Background46.8 +/- 28.7bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF143/MA0088.2/Jaspar

Match Rank:1
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CCAAATTKCA---
TACCCACAATGCATTG
 A C G T A C G T A C G T A T G C A G T C G T C A G T C A G C T A C G A T C A G T A C T G A G T C G T C A A C G T A C G T A C G T
A G C T C G T A G T A C G T A C A G T C C T G A A G T C T C G A C T G A C G A T T C A G A G T C G T C A G A C T G A C T C T A G

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:2
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------CCAAATTKCA
CANAGNNCAAAGTCCA
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C G T C A G T C A G C T A C G A T C A G T A C T G A G T C G T C A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

HNF4G/MA0484.1/Jaspar

Match Rank:3
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----CCAAATTKCA
AGAGTCCAAAGTCCA
 A C G T A C G T A C G T A C G T A C G T A T G C A G T C G T C A G T C A G C T A C G A T C A G T A C T G A G T C G T C A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:4
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CCAAATTKCA
GKVTCADRTTWC-
 A C G T A C G T A C G T A T G C A G T C G T C A G T C A G C T A C G A T C A G T A C T G A G T C G T C A
C T A G C A T G T G C A A C G T A G T C C G T A C A T G T C A G A C G T A C G T G C T A A G T C A C G T

PB0146.1_Mafk_2/Jaspar

Match Rank:5
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CCAAATTKCA---
GAAAAAATTGCAAGG
 A C G T A C G T A T G C A G T C G T C A G T C A G C T A C G A T C A G T A C T G A G T C G T C A A C G T A C G T A C G T
T C A G G T C A T C G A C T G A C T G A G C T A G C T A C A G T A G C T C A T G A G T C T G C A G T C A A T C G T C A G

YY1/MA0095.2/Jaspar

Match Rank:6
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----CCAAATTKCA
GCNGCCATCTTG--
 A C G T A C G T A C G T A C G T A T G C A G T C G T C A G T C A G C T A C G A T C A G T A C T G A G T C G T C A
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G A C G T A C G T

PB0169.1_Sox15_2/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CCAAATTKCA-----
TNGAATTTCATTNAN
 A T G C A G T C G T C A G T C A G C T A C G A T C A G T A C T G A G T C G T C A A C G T A C G T A C G T A C G T A C G T
A G C T A T G C C T A G C T G A G T C A G A C T C A G T G C A T T G A C C T G A C A G T G A C T A G T C T G C A T G C A

CEBPA/MA0102.3/Jaspar

Match Rank:8
Score:0.57
Offset:4
Orientation:forward strand
Alignment:CCAAATTKCA-----
----ATTGCACAATA
 A T G C A G T C G T C A G T C A G C T A C G A T C A G T A C T G A G T C G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C G A A C G T A C G T C A T G A G T C T G C A G A T C G T C A C G T A A G C T G T C A

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:CCAAATTKCA---
---ATTTGCATAT
 A T G C A G T C G T C A G T C A G C T A C G A T C A G T A C T G A G T C G T C A A C G T A C G T A C G T
A C G T A C G T A C G T G C T A C G A T G A C T A C G T C T A G G A T C G T C A C G A T C G T A C A G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.56
Offset:3
Orientation:forward strand
Alignment:CCAAATTKCA---
---ATTTGCATAA
 A T G C A G T C G T C A G T C A G C T A C G A T C A G T A C T G A G T C G T C A A C G T A C G T A C G T
A C G T A C G T A C G T C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A