Information for 6-CAAGATTCAT (Motif 12)

A G T C C G T A C G T A A C T G C G T A A C G T A C G T G T A C C G T A A C G T
Reverse Opposite:
C G T A A C G T A C T G C G T A C G T A A C G T A G T C A C G T A C G T A C T G
p-value:1e-6
log p-value:-1.434e+01
Information Content per bp:1.962
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.61%
Number of Background Sequences with motif10.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets48.2 +/- 18.9bp
Average Position of motif in Background60.3 +/- 25.9bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0178.1_Sox8_2/Jaspar

Match Rank:1
Score:0.70
Offset:2
Orientation:forward strand
Alignment:CAAGATTCAT------
--ACATTCATGACACG
 A G T C C G T A C G T A A C T G C G T A A C G T A C G T G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:CAAGATTCAT
GAATATTCAT
 A G T C C G T A C G T A A C T G C G T A A C G T A C G T G T A C C G T A A C G T
T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T

NFE2/MA0841.1/Jaspar

Match Rank:3
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CAAGATTCAT-
CATGACTCATC
 A G T C C G T A C G T A A C T G C G T A A C G T A C G T G T A C C G T A A C G T A C G T
T G A C T C G A G A C T A C T G G T C A T A G C A G C T G A T C T G C A A G C T A T G C

Nr2e3/MA0164.1/Jaspar

Match Rank:4
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CAAGATTCAT
CAAGCTT---
 A G T C C G T A C G T A A C T G C G T A A C G T A C G T G T A C C G T A A C G T
G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T A C G T A C G T

JDP2/MA0655.1/Jaspar

Match Rank:5
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CAAGATTCAT
-ATGACTCAT
 A G T C C G T A C G T A A C T G C G T A A C G T A C G T G T A C C G T A A C G T
A C G T T C G A G A C T A C T G C G T A T A G C C A G T G T A C C G T A G A C T

PB0170.1_Sox17_2/Jaspar

Match Rank:6
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CAAGATTCAT-----
GACCACATTCATACAAT
 A C G T A C G T A G T C C G T A C G T A A C T G C G T A A C G T A C G T G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:7
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CAAGATTCAT--
--TGATTGATGA
 A G T C C G T A C G T A A C T G C G T A A C G T A C G T G T A C C G T A A C G T A C G T A C G T
A C G T A C G T C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:8
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CAAGATTCAT---
-ATGATKGATGRC
 A G T C C G T A C G T A A C T G C G T A A C G T A C G T G T A C C G T A A C G T A C G T A C G T A C G T
A C G T C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:9
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CAAGATTCAT----
--TGATTTATGGCC
 A G T C C G T A C G T A A C T G C G T A A C G T A C G T G T A C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C

Hoxa9/MA0594.1/Jaspar

Match Rank:10
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CAAGATTCAT---
--TGATTTATGGC
 A G T C C G T A C G T A A C T G C G T A A C G T A C G T G T A C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C