Information for 3-TGCTGGCWGGCTTTGG (Motif 8)

A C G T C A T G A G T C A C G T A C T G A C T G A G T C C G A T C T A G A C T G A G T C C G A T A G C T A G C T A C T G C T A G
Reverse Opposite:
A G T C A G T C C T G A C T G A C G T A A C T G T A G C A G T C G C T A C T A G T A G C A G T C C G T A C T A G G T A C G T C A
p-value:1e-10
log p-value:-2.476e+01
Information Content per bp:1.787
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.58%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets78.4 +/- 18.5bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:1
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:TGCTGGCWGGCTTTGG-
-------TGACCTTGAN
 A C G T C A T G A G T C A C G T A C T G A C T G A G T C C G A T C T A G A C T G A G T C C G A T A G C T A G C T A C T G C T A G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TGCTGGCWGGCTTTGG
NNTNNTGTCTGGNNTNG-
 A C G T A C G T A C G T C A T G A G T C A C G T A C T G A C T G A G T C C G A T C T A G A C T G A G T C C G A T A G C T A G C T A C T G C T A G
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G A C G T

Nr5a2/MA0505.1/Jaspar

Match Rank:3
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:TGCTGGCWGGCTTTGG----
-----GCTGACCTTGAACTN
 A C G T C A T G A G T C A C G T A C T G A C T G A G T C C G A T C T A G A C T G A G T C C G A T A G C T A G C T A C T G C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A C G T G A C G C A T T C A G C T G A A G T C A G T C A G C T C A G T A T C G C T G A T C G A G A T C G A C T A G C T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:4
Score:0.53
Offset:7
Orientation:reverse strand
Alignment:TGCTGGCWGGCTTTGG-
-------TGACCTTGAV
 A C G T C A T G A G T C A C G T A C T G A C T G A G T C C G A T C T A G A C T G A G T C C G A T A G C T A G C T A C T G C T A G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.52
Offset:9
Orientation:reverse strand
Alignment:TGCTGGCWGGCTTTGG---
---------CCTTTGATGT
 A C G T C A T G A G T C A C G T A C T G A C T G A G T C C G A T C T A G A C T G A G T C C G A T A G C T A G C T A C T G C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:6
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--TGCTGGCWGGCTTTGG
GGTGYTGACAGS------
 A C G T A C G T A C G T C A T G A G T C A C G T A C T G A C T G A G T C C G A T C T A G A C T G A G T C C G A T A G C T A G C T A C T G C T A G
T C A G A T C G G A C T A C T G G A C T C A G T C T A G C G T A G T A C C G T A C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:7
Score:0.51
Offset:9
Orientation:forward strand
Alignment:TGCTGGCWGGCTTTGG---
---------CCWTTGTYYB
 A C G T C A T G A G T C A C G T A C T G A C T G A G T C C G A T C T A G A C T G A G T C C G A T A G C T A G C T A C T G C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:8
Score:0.51
Offset:9
Orientation:forward strand
Alignment:TGCTGGCWGGCTTTGG-
---------CCWTTGTY
 A C G T C A T G A G T C A C G T A C T G A C T G A G T C C G A T C T A G A C T G A G T C C G A T A G C T A G C T A C T G C T A G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:9
Score:0.51
Offset:5
Orientation:reverse strand
Alignment:TGCTGGCWGGCTTTGG
-----BNTGDCCTTG-
 A C G T C A T G A G T C A C G T A C T G A C T G A G T C C G A T C T A G A C T G A G T C C G A T A G C T A G C T A C T G C T A G
A C G T A C G T A C G T A C G T A C G T A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T

TCF7L2/MA0523.1/Jaspar

Match Rank:10
Score:0.50
Offset:7
Orientation:reverse strand
Alignment:TGCTGGCWGGCTTTGG-----
-------TNCCTTTGATCTTN
 A C G T C A T G A G T C A C G T A C T G A C T G A G T C C G A T C T A G A C T G A G T C C G A T A G C T A G C T A C T G C T A G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A G T A G C T A G T C A G T C A G C T A G C T A C G T A T C G C G T A C G A T T A G C G A C T A G C T G A C T