Information for 11-GGGAGTTCGV (Motif 20)

A C T G A C T G T C A G T C G A C A T G A G C T G C A T A G T C C A T G T A G C
Reverse Opposite:
A T C G G T A C C T A G C G T A T C G A G T A C A G C T A G T C T G A C A G T C
p-value:1e-6
log p-value:-1.610e+01
Information Content per bp:1.672
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.19%
Number of Background Sequences with motif228.9
Percentage of Background Sequences with motif0.49%
Average Position of motif in Targets46.1 +/- 26.6bp
Average Position of motif in Background50.5 +/- 28.4bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:1
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GGGAGTTCGV
NGGGGATTTCCC
 A C G T A C G T A C T G A C T G T C A G T C G A C A T G A G C T G C A T A G T C C A T G T A G C
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C

REL/MA0101.1/Jaspar

Match Rank:2
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GGGAGTTCGV
GGGGATTTCC-
 A C G T A C T G A C T G T C A G T C G A C A T G A G C T G C A T A G T C C A T G T A G C
A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C A C G T

PB0149.1_Myb_2/Jaspar

Match Rank:3
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----GGGAGTTCGV--
NNNTGGCAGTTGGTNN
 A C G T A C G T A C G T A C G T A C T G A C T G T C A G T C G A C A T G A G C T G C A T A G T C C A T G T A G C A C G T A C G T
C T A G T A G C T C G A G A C T C T A G C T A G A G T C C T G A A C T G A C G T G A C T C T A G T C A G C A G T G T A C T A C G

RELA/MA0107.1/Jaspar

Match Rank:4
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GGGAGTTCGV
GGGAATTTCC-
 A C G T A C T G A C T G T C A G T C G A C A T G A G C T G C A T A G T C C A T G T A G C
A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T

MF0003.1_REL_class/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GGGAGTTCGV
GGGGATTTCC-
 A C G T A C T G A C T G T C A G T C G A C A T G A G C T G C A T A G T C C A T G T A G C
A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:6
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GGGAGTTCGV
GGGAATTTCC
 A C T G A C T G T C A G T C G A C A T G A G C T G C A T A G T C C A T G T A G C
A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C

Myb/MA0100.2/Jaspar

Match Rank:7
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GGGAGTTCGV
TGGCAGTTGN-
 A C G T A C T G A C T G T C A G T C G A C A T G A G C T G C A T A G T C C A T G T A G C
C G A T A C T G C T A G A G T C C G T A A C T G A G C T A C G T C T A G T C A G A C G T

PB0150.1_Mybl1_2/Jaspar

Match Rank:8
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GGGAGTTCGV--
CACGGCAGTTGGTNN
 A C G T A C G T A C G T A C T G A C T G T C A G T C G A C A T G A G C T G C A T A G T C C A T G T A G C A C G T A C G T
T G A C C G T A A G T C C A T G C T A G A G T C T C G A A C T G A C G T C A G T C T A G C T A G A C G T T A G C T A C G

PB0140.1_Irf6_2/Jaspar

Match Rank:9
Score:0.59
Offset:-6
Orientation:reverse strand
Alignment:------GGGAGTTCGV
NNNACCGAGAGTNNN-
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G T C A G T C G A C A T G A G C T G C A T A G T C C A T G T A G C
A T C G G A C T C A T G G T C A A G T C G A T C C T A G T C G A T A C G G T C A C A T G C G A T T C A G T A C G A C G T A C G T

PB0139.1_Irf5_2/Jaspar

Match Rank:10
Score:0.58
Offset:-6
Orientation:forward strand
Alignment:------GGGAGTTCGV
TTGACCGAGAATTCC-
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G T C A G T C G A C A T G A G C T G C A T A G T C C A T G T A G C
A G C T G C A T C T A G C G T A G A C T G T A C C T A G C T G A A T C G C G T A C T G A G A C T G A C T A G T C T A G C A C G T