Information for 5-YKGTMTKGMKKCWGWK (Motif 8)

A G C T A C T G A C T G A C G T G T A C A C G T C A G T A C T G G T C A A C G T A C T G A G T C C G T A A T C G C G A T A C G T
Reverse Opposite:
G T C A C G T A A T G C C G A T A C T G G T A C T G C A A C G T A G T C G T C A C G T A A C T G C G T A A G T C G T A C T C G A
p-value:1e-10
log p-value:-2.466e+01
Information Content per bp:1.760
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.12%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets37.8 +/- 22.9bp
Average Position of motif in Background50.1 +/- 15.7bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----YKGTMTKGMKKCWGWK
NNTNNTGTCTGGNNTNG---
 A C G T A C G T A C G T A C G T A G C T A C T G A C T G A C G T G T A C A C G T C A G T A C T G G T C A A C G T A C T G A G T C C G T A A T C G C G A T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.60
Offset:0
Orientation:forward strand
Alignment:YKGTMTKGMKKCWGWK
CTGTCTGG--------
 A G C T A C T G A C T G A C G T G T A C A C G T C A G T A C T G G T C A A C G T A C T G A G T C C G T A A T C G C G A T A C G T
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:3
Score:0.58
Offset:1
Orientation:forward strand
Alignment:YKGTMTKGMKKCWGWK
-GGTCTGGCAT-----
 A G C T A C T G A C T G A C G T G T A C A C G T C A G T A C T G G T C A A C G T A C T G A G T C C G T A A T C G C G A T A C G T
A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--YKGTMTKGMKKCWGWK
VBSYGTCTGG--------
 A C G T A C G T A G C T A C T G A C T G A C G T G T A C A C G T C A G T A C T G G T C A A C G T A C T G A G T C C G T A A T C G C G A T A C G T
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.52
Offset:0
Orientation:forward strand
Alignment:YKGTMTKGMKKCWGWK
TWGTCTGV--------
 A G C T A C T G A C T G A C G T G T A C A C G T C A G T A C T G G T C A A C G T A C T G A G T C C G T A A T C G C G A T A C G T
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SMAD3/MA0795.1/Jaspar

Match Rank:6
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:YKGTMTKGMKKCWGWK
-TGTCTAGACG-----
 A G C T A C T G A C T G A C G T G T A C A C G T C A G T A C T G G T C A A C G T A C T G A G T C C G T A A T C G C G A T A C G T
A C G T C G A T C A T G C A G T T A G C A C G T T C G A A T C G G C T A G A T C C T A G A C G T A C G T A C G T A C G T A C G T

PB0050.1_Osr1_1/Jaspar

Match Rank:7
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:YKGTMTKGMKKCWGWK---
---TNNTGCTACTGTNNNN
 A G C T A C T G A C T G A C G T G T A C A C G T C A G T A C T G G T C A A C G T A C T G A G T C C G T A A T C G C G A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G A C T C G A T A C G T C G A T T C A G A G T C A G C T G C T A A G T C A G C T C T A G A C G T C G T A G C T A C G T A C G A T

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:8
Score:0.49
Offset:2
Orientation:forward strand
Alignment:YKGTMTKGMKKCWGWK
--NTATYGATCH----
 A G C T A C T G A C T G A C G T G T A C A C G T C A G T A C T G G T C A A C G T A C T G A G T C C G T A A T C G C G A T A C G T
A C G T A C G T C T A G C A G T C G T A A C G T A G T C A C T G C G T A A G C T A G T C G A T C A C G T A C G T A C G T A C G T

ATF4/MA0833.1/Jaspar

Match Rank:9
Score:0.49
Offset:3
Orientation:reverse strand
Alignment:YKGTMTKGMKKCWGWK
---TATTGCATCATCC
 A G C T A C T G A C T G A C G T G T A C A C G T C A G T A C T G G T C A A C G T A C T G A G T C C G T A A T C G C G A T A C G T
A C G T A C G T A C G T A C G T T C G A C G A T C A G T C T A G G T A C T C G A C G A T G A T C G T C A A C G T G T A C G A T C

PB0036.1_Irf6_1/Jaspar

Match Rank:10
Score:0.48
Offset:-4
Orientation:reverse strand
Alignment:----YKGTMTKGMKKCWGWK
NNNTTGGTTTCGNTNNN---
 A C G T A C G T A C G T A C G T A G C T A C T G A C T G A C G T G T A C A C G T C A G T A C T G G T C A A C G T A C T G A G T C C G T A A T C G C G A T A C G T
G C T A G T A C G C A T A C G T A G C T C T A G A C T G A C G T G C A T A C G T A G T C C T A G C T G A G A C T G A T C G C T A C A T G A C G T A C G T A C G T