Information for 3-GCAGAGATRAAMNTTC (Motif 4)

C T A G T G A C G C T A C T A G C T G A T A C G C T G A C A G T C T A G T G C A T G C A G T A C G T C A C G A T C A G T A T G C
Reverse Opposite:
T A C G G T C A G C T A C A G T A C T G A C G T A C G T G A T C G T C A A G C T A T G C A G C T G A T C C A G T A C T G A G T C
p-value:1e-12
log p-value:-2.951e+01
Information Content per bp:1.606
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif5.84%
Number of Background Sequences with motif424.6
Percentage of Background Sequences with motif0.90%
Average Position of motif in Targets41.3 +/- 22.3bp
Average Position of motif in Background49.3 +/- 27.7bp
Strand Bias (log2 ratio + to - strand density)-0.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0125.1_Obox5_2/Jaspar

Match Rank:1
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GCAGAGATRAAMNTTC
NANAGGGATTAATTATN
 A C G T C T A G T G A C G C T A C T A G C T G A T A C G C T G A C A G T C T A G T G C A T G C A G T A C G T C A C G A T C A G T A T G C
T C G A C T G A T C A G T C G A T C A G T C A G A C T G G C T A A C G T C G A T C G T A C G T A G C A T G A C T T C G A G C A T T G A C

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:2
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GCAGAGATRAAMNTTC
GCAGTGATTT------
 C T A G T G A C G C T A C T A G C T G A T A C G C T G A C A G T C T A G T G C A T G C A G T A C G T C A C G A T C A G T A T G C
C T A G A G T C G C T A A T C G C G A T A C T G T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0021.1_Gata3_1/Jaspar

Match Rank:3
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---GCAGAGATRAAMNTTC---
TTTTTAGAGATAAGAAATAAAG
 A C G T A C G T A C G T C T A G T G A C G C T A C T A G C T G A T A C G C T G A C A G T C T A G T G C A T G C A G T A C G T C A C G A T C A G T A T G C A C G T A C G T A C G T
A C G T C A G T G C A T C A G T C G A T C T G A C A T G G C T A A C T G C G T A C G A T G C T A C G T A T A C G T G C A C T G A G C T A A C G T C G T A G T C A T C G A C A T G

GATA3/MA0037.2/Jaspar

Match Rank:4
Score:0.56
Offset:4
Orientation:forward strand
Alignment:GCAGAGATRAAMNTTC
----AGATAAGA----
 C T A G T G A C G C T A C T A G C T G A T A C G C T G A C A G T C T A G T G C A T G C A G T A C G T C A C G A T C A G T A T G C
A C G T A C G T A C G T A C G T C G T A A C T G C G T A A C G T C G T A C G T A C T A G T C G A A C G T A C G T A C G T A C G T

Gata1/MA0035.3/Jaspar

Match Rank:5
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GCAGAGATRAAMNTTC
--ANAGATAAGAA---
 C T A G T G A C G C T A C T A G C T G A T A C G C T G A C A G T C T A G T G C A T G C A G T A C G T C A C G A T C A G T A T G C
A C G T A C G T C T G A T A G C C G T A A C T G C G T A A C G T C G T A C T G A T C A G T C G A T C G A A C G T A C G T A C G T

PH0124.1_Obox5_1/Jaspar

Match Rank:6
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GCAGAGATRAAMNTTC
TAGAGGGATTAAATTTC
 A C G T C T A G T G A C G C T A C T A G C T G A T A C G C T G A C A G T C T A G T G C A T G C A G T A C G T C A C G A T C A G T A T G C
G C A T C T G A T C A G T C G A T C A G C T A G C A T G C G T A A C G T C G A T C G T A C G T A G C T A G A C T A G C T G C A T G T A C

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:7
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GCAGAGATRAAMNTTC
--AGAAACGAAAGT--
 C T A G T G A C G C T A C T A G C T G A T A C G C T G A C A G T C T A G T G C A T G C A G T A C G T C A C G A T C A G T A T G C
A C G T A C G T T C G A C T A G C T G A C G T A C G T A A G T C T A C G C G T A C G T A C G T A A T C G A C G T A C G T A C G T

PH0130.1_Otx2/Jaspar

Match Rank:8
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GCAGAGATRAAMNTTC
TGTAGGGATTAATTGTC
 A C G T C T A G T G A C G C T A C T A G C T G A T A C G C T G A C A G T C T A G T G C A T G C A G T A C G T C A C G A T C A G T A T G C
C A G T C T A G C G A T T C G A T C A G T C A G C A T G G T C A C G A T C G A T C G T A C T G A A G C T G A C T C T A G C A G T G A T C

Gata4/MA0482.1/Jaspar

Match Rank:9
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GCAGAGATRAAMNTTC
-NNGAGATAAGA----
 C T A G T G A C G C T A C T A G C T G A T A C G C T G A C A G T C T A G T G C A T G C A G T A C G T C A C G A T C A G T A T G C
A C G T T C A G C T A G T A C G C G T A A C T G C G T A A C G T C G T A C T G A T A C G T C G A A C G T A C G T A C G T A C G T

PB0023.1_Gata6_1/Jaspar

Match Rank:10
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GCAGAGATRAAMNTTC
TATAGAGATAAGAATTG
 A C G T C T A G T G A C G C T A C T A G C T G A T A C G C T G A C A G T C T A G T G C A T G C A G T A C G T C A C G A T C A G T A T G C
C G A T G T C A C G A T T G C A C A G T G C T A A C T G C G T A A G C T C G T A C G T A A T C G T G C A C T G A C G A T G C A T T C A G