Information for 2-TTGCTCAGACTCA (Motif 3)

A G C T C A G T A C T G A G T C A C G T T G A C C G T A T C A G G C T A G T A C G A C T G T A C G T C A
Reverse Opposite:
C A G T A C T G C T G A A C T G C G A T A G T C C G A T A C T G G T C A C T A G T G A C G T C A T C G A
p-value:1e-12
log p-value:-2.991e+01
Information Content per bp:1.675
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif4.72%
Number of Background Sequences with motif250.9
Percentage of Background Sequences with motif0.53%
Average Position of motif in Targets47.8 +/- 24.2bp
Average Position of motif in Background49.9 +/- 25.3bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:TTGCTCAGACTCA
--GCTCGGSCTC-
 A G C T C A G T A C T G A G T C A C G T T G A C C G T A T C A G G C T A G T A C G A C T G T A C G T C A
A C G T A C G T C T A G G T A C A C G T A T G C C T A G A C T G T A C G A G T C A C G T A G T C A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:TTGCTCAGACTCA
-TGCCCAGNHW--
 A G C T C A G T A C T G A G T C A C G T T G A C C G T A T C A G G C T A G T A C G A C T G T A C G T C A
A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A A C G T A C G T

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:3
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--TTGCTCAGACTCA
KGTTGCTAGGMAACA
 A C G T A C G T A G C T C A G T A C T G A G T C A C G T T G A C C G T A T C A G G C T A G T A C G A C T G T A C G T C A
C A T G A C T G A G C T C G A T C T A G A G T C A G C T C T G A C T A G A C T G T G C A C T G A T C G A A G T C G T C A

PB0054.1_Rfx3_1/Jaspar

Match Rank:4
Score:0.55
Offset:-8
Orientation:reverse strand
Alignment:--------TTGCTCAGACTCA--
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C A G T A C T G A G T C A C G T T G A C C G T A T C A G G C T A G T A C G A C T G T A C G T C A A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

POL002.1_INR/Jaspar

Match Rank:5
Score:0.54
Offset:4
Orientation:forward strand
Alignment:TTGCTCAGACTCA
----TCAGTCTT-
 A G C T C A G T A C T G A G T C A C G T T G A C C G T A T C A G G C T A G T A C G A C T G T A C G T C A
A C G T A C G T A C G T A C G T C A G T A G T C C G T A A T C G G A C T G A T C A G C T A G C T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:TTGCTCAGACTCA
----BCAGACWA-
 A G C T C A G T A C T G A G T C A C G T T G A C C G T A T C A G G C T A G T A C G A C T G T A C G T C A
A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T

Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer

Match Rank:7
Score:0.53
Offset:0
Orientation:forward strand
Alignment:TTGCTCAGACTCA
HTGCTGAGTCAT-
 A G C T C A G T A C T G A G T C A C G T T G A C C G T A T C A G G C T A G T A C G A C T G T A C G T C A
G T C A G C A T A C T G G T A C G A C T A C T G G C T A A T C G C A G T G T A C C G T A A G C T A C G T

MAF::NFE2/MA0501.1/Jaspar

Match Rank:8
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---TTGCTCAGACTCA
AAANTGCTGAGTCAT-
 A C G T A C G T A C G T A G C T C A G T A C T G A G T C A C G T T G A C C G T A T C A G G C T A G T A C G A C T G T A C G T C A
C T G A C G T A G C T A G A C T G A C T T A C G G T A C G C A T C A T G G C T A T A C G A C G T G T A C C G T A A G C T A C G T

Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---TTGCTCAGACTCA
AWWNTGCTGAGTCAT-
 A C G T A C G T A C G T A G C T C A G T A C T G A G T C A C G T T G A C C G T A T C A G G C T A G T A C G A C T G T A C G T C A
C G T A C G T A C G T A G C A T G C A T T A C G G T A C G A C T A C T G C G T A A T C G A C G T G T A C C G T A A G C T A C G T

STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer

Match Rank:10
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-TTGCTCAGACTCA
NTTTCTNAGAAA--
 A C G T A G C T C A G T A C T G A G T C A C G T T G A C C G T A T C A G G C T A G T A C G A C T G T A C G T C A
C T G A A C G T A C G T A C G T A G T C G A C T C G A T C T G A A C T G C G T A C G T A T C G A A C G T A C G T