Information for 10-AGCACTTAGC (Motif 28)

C G T A A C T G A G T C C G T A A G T C A C G T A C G T C G T A A C T G G T A C
Reverse Opposite:
A C T G A G T C A C G T C G T A C G T A A C T G A C G T A C T G A G T C A C G T
p-value:1e-5
log p-value:-1.250e+01
Information Content per bp:1.961
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif3.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets24.7 +/- 10.7bp
Average Position of motif in Background37.2 +/- 21.9bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:1
Score:0.82
Offset:-1
Orientation:forward strand
Alignment:-AGCACTTAGC
AAGCACTTAA-
 A C G T C G T A A C T G A G T C C G T A A G T C A C G T A C G T C G T A A C T G G T A C
T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A A C G T

ISL2/MA0914.1/Jaspar

Match Rank:2
Score:0.80
Offset:1
Orientation:forward strand
Alignment:AGCACTTAGC
-GCACTTAA-
 C G T A A C T G A G T C C G T A A G T C A C G T A C G T C G T A A C T G G T A C
A C G T T A C G G A T C G C T A G T A C C G A T G A C T G C T A C T G A A C G T

NKX3-2/MA0122.2/Jaspar

Match Rank:3
Score:0.79
Offset:0
Orientation:forward strand
Alignment:AGCACTTAGC
ACCACTTAA-
 C G T A A C T G A G T C C G T A A G T C A C G T A C G T C G T A A C T G G T A C
T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:4
Score:0.78
Offset:0
Orientation:forward strand
Alignment:AGCACTTAGC
ACCACTTAA-
 C G T A A C T G A G T C C G T A A G T C A C G T A C G T C G T A A C T G G T A C
T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A A C G T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:5
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:AGCACTTAGC
-BCMATTAG-
 C G T A A C T G A G T C C G T A A G T C A C G T A C G T C G T A A C T G G T A C
A C G T A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T

PH0004.1_Nkx3-2/Jaspar

Match Rank:6
Score:0.74
Offset:-4
Orientation:forward strand
Alignment:----AGCACTTAGC---
CATAACCACTTAACAAC
 A C G T A C G T A C G T A C G T C G T A A C T G A G T C C G T A A G T C A C G T A C G T C G T A A C T G G T A C A C G T A C G T A C G T
T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:7
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-AGCACTTAGC
MRSCACTYAA-
 A C G T C G T A A C T G A G T C C G T A A G T C A C G T A C G T C G T A A C T G G T A C
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T

Barhl1/MA0877.1/Jaspar

Match Rank:8
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:AGCACTTAGC
NNCAATTANN
 C G T A A C T G A G T C C G T A A G T C A C G T A C G T C G T A A C T G G T A C
T C G A T A C G G A T C T C G A G C T A G A C T G C A T C G T A C T A G T A G C

NKX2-3/MA0672.1/Jaspar

Match Rank:9
Score:0.71
Offset:0
Orientation:forward strand
Alignment:AGCACTTAGC
ACCACTTGAA
 C G T A A C T G A G T C C G T A A G T C A C G T A C G T C G T A A C T G G T A C
T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A

PH0117.1_Nkx3-1/Jaspar

Match Rank:10
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----AGCACTTAGC--
TACTAAGTACTTAAATG
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G A G T C C G T A A G T C A C G T A C G T C G T A A C T G G T A C A C G T A C G T
C G A T C G A T G A T C C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T G A C G T A C G A T A T C G