Information for 8-RCYTAGTATT (Motif 26)

C T A G A G T C A G T C C A G T C G T A C T A G C G A T G T C A G A C T C G A T
Reverse Opposite:
C G T A C T G A C A G T G C T A G A T C A C G T G T C A C T A G A C T G G A T C
p-value:1e-5
log p-value:-1.297e+01
Information Content per bp:1.677
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif5.17%
Number of Background Sequences with motif777.3
Percentage of Background Sequences with motif1.65%
Average Position of motif in Targets49.9 +/- 21.4bp
Average Position of motif in Background49.3 +/- 29.3bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid5a/MA0602.1/Jaspar

Match Rank:1
Score:0.64
Offset:2
Orientation:forward strand
Alignment:RCYTAGTATT------
--CTAATATTGCTAAA
 C T A G A G T C A G T C C A G T C G T A C T A G C G A T G T C A G A C T C G A T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

PB0002.1_Arid5a_1/Jaspar

Match Rank:2
Score:0.64
Offset:2
Orientation:forward strand
Alignment:RCYTAGTATT------
--CTAATATTGCTAAA
 C T A G A G T C A G T C C A G T C G T A C T A G C G A T G T C A G A C T C G A T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

POU6F2/MA0793.1/Jaspar

Match Rank:3
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-RCYTAGTATT
AGCTCATTAT-
 A C G T C T A G A G T C A G T C C A G T C G T A C T A G C G A T G T C A G A C T C G A T
C T G A T A C G G A T C C A G T G T A C G T C A A G C T A C G T G C T A G C A T A C G T

LBX1/MA0618.1/Jaspar

Match Rank:4
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:RCYTAGTATT
-CTAATTAA-
 C T A G A G T C A G T C C A G T C G T A C T A G C G A T G T C A G A C T C G A T
A C G T T A G C A G C T G C T A C T G A A C G T A C G T C T G A G C T A A C G T

PH0107.1_Msx2/Jaspar

Match Rank:5
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----RCYTAGTATT---
GAAGACCAATTAGCGCT
 A C G T A C G T A C G T A C G T C T A G A G T C A G T C C A G T C G T A C T A G C G A T G T C A G A C T C G A T A C G T A C G T A C G T
T C A G T G C A C T G A T A C G C T G A A T G C G A T C C G T A G T C A C G A T G A C T C T G A C A T G G A T C C A T G G A T C A G C T

Nobox/MA0125.1/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:RCYTAGTATT
ACCAATTA--
 C T A G A G T C A G T C C A G T C G T A C T A G C G A T G T C A G A C T C G A T
T C G A A T G C G A T C G T C A G T C A A C G T C G A T C T G A A C G T A C G T

MF0010.1_Homeobox_class/Jaspar

Match Rank:7
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:RCYTAGTATT
---AATTATT
 C T A G A G T C A G T C C A G T C G T A C T A G C G A T G T C A G A C T C G A T
A C G T A C G T A C G T G C T A G C T A G A C T G A C T C G T A G C A T C G A T

PH0152.1_Pou6f1_2/Jaspar

Match Rank:8
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----RCYTAGTATT---
GCAACCTCATTATNNNN
 A C G T A C G T A C G T A C G T C T A G A G T C A G T C C A G T C G T A C T A G C G A T G T C A G A C T C G A T A C G T A C G T A C G T
C A T G G T A C G T C A C G T A A T G C G T A C A C G T G T A C C G T A A C G T C G A T C G T A C G A T A T C G C G A T C A G T A G C T

PH0151.1_Pou6f1_1/Jaspar

Match Rank:9
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----RCYTAGTATT---
NNNACCTCATTATCNTN
 A C G T A C G T A C G T A C G T C T A G A G T C A G T C C A G T C G T A C T A G C G A T G T C A G A C T C G A T A C G T A C G T A C G T
C A T G G A T C G T C A C G T A T A C G G T A C A C G T G T A C C G T A C G A T C G A T C G T A C G A T A T G C A C T G C G A T A G T C

LHX2/MA0700.1/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:forward strand
Alignment:RCYTAGTATT
ACTAATTAAC
 C T A G A G T C A G T C C A G T C G T A C T A G C G A T G T C A G A C T C G A T
T C G A A G T C G A C T G T C A C T G A A C G T A C G T C T G A C T G A A T G C