Information for 14-TTTGCAGACAGGW (Motif 19)

A G C T A C G T A C G T A T C G A G T C C G T A T C A G C G T A A G T C C G T A A C T G C T A G C G T A
Reverse Opposite:
C G A T A G T C A G T C C G A T A C T G C G A T A G T C A C G T C T A G A T G C C G T A G T C A C T G A
p-value:1e-11
log p-value:-2.593e+01
Information Content per bp:1.852
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.11%
Number of Background Sequences with motif14.6
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets43.9 +/- 23.5bp
Average Position of motif in Background48.1 +/- 26.7bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MTF1/MA0863.1/Jaspar

Match Rank:1
Score:0.65
Offset:0
Orientation:forward strand
Alignment:TTTGCAGACAGGW-
TTTGCACACGGCAC
 A G C T A C G T A C G T A T C G A G T C C G T A T C A G C G T A A G T C C G T A A C T G C T A G C G T A A C G T
C A G T A C G T G A C T T C A G G T A C C G T A T A G C G T C A A G T C C A T G C A T G A G T C T G C A G A T C

PH0144.1_Pou2f2/Jaspar

Match Rank:2
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----TTTGCAGACAGGW
TNTAATTTGCATANNN--
 A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C G T A T C G A G T C C G T A T C A G C G T A A G T C C G T A A C T G C T A G C G T A
A C G T G A T C C A G T G T C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A C G A T C G T A G T A C C G T A T C G A A C G T A C G T

Pou2f3/MA0627.1/Jaspar

Match Rank:3
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----TTTGCAGACAGGW
TNTAATTTGCATACNA--
 A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C G T A T C G A G T C C G T A T C A G C G T A A G T C C G T A A C T G C T A G C G T A
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A A C G T A C G T

PH0145.1_Pou2f3/Jaspar

Match Rank:4
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----TTTGCAGACAGGW
TNTAATTTGCATACNA--
 A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C G T A T C G A G T C C G T A T C A G C G T A A G T C C G T A A C T G C T A G C G T A
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:TTTGCAGACAGGW
---CCAGACAG--
 A G C T A C G T A C G T A T C G A G T C C G T A T C A G C G T A A G T C C G T A A C T G C T A G C G T A
A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T

PB0044.1_Mtf1_1/Jaspar

Match Rank:6
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--TTTGCAGACAGGW-
NNTTTGCACACGGCCC
 A C G T A C G T A G C T A C G T A C G T A T C G A G T C C G T A T C A G C G T A A G T C C G T A A C T G C T A G C G T A A C G T
C G A T G A C T C A G T A C G T G A C T A C T G G A T C C T G A A G T C G C T A G A T C A C T G C T A G G A T C T A G C G T A C

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TTTGCAGACAGGW
ATTTGCATAA----
 A C G T A G C T A C G T A C G T A T C G A G T C C G T A T C A G C G T A A G T C C G T A A C T G C T A G C G T A
C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A A C G T A C G T A C G T A C G T

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TTTGCAGACAGGW
ATTTGCATAT----
 A C G T A G C T A C G T A C G T A T C G A G T C C G T A T C A G C G T A A G T C C G T A A C T G C T A G C G T A
G C T A C G A T G A C T A C G T C T A G G A T C G T C A C G A T C G T A C A G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:TTTGCAGACAGGW
---CCAGACRSVB
 A G C T A C G T A C G T A T C G A G T C C G T A T C A G C G T A A G T C C G T A A C T G C T A G C G T A
A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

POU2F2/MA0507.1/Jaspar

Match Rank:10
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----TTTGCAGACAGGW
TTCATTTGCATAT----
 A C G T A C G T A C G T A C G T A G C T A C G T A C G T A T C G A G T C C G T A T C A G C G T A A G T C C G T A A C T G C T A G C G T A
G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T A C G T A C G T A C G T A C G T