Information for 5-WCACTGATGGMTCAAG (Motif 10)

G C T A A G T C G C T A G T A C A C G T A T C G C G T A C G A T A C T G C A T G G T A C C G A T A G T C C G T A C G T A C T A G
Reverse Opposite:
A G T C A C G T A C G T T A C G C G T A C A T G G T A C G T A C C G T A G A C T A T G C G T C A A C T G C A G T A C T G C G A T
p-value:1e-12
log p-value:-2.939e+01
Information Content per bp:1.729
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.86%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets56.3 +/- 18.9bp
Average Position of motif in Background20.1 +/- 12.4bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax6/MA0069.1/Jaspar

Match Rank:1
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:WCACTGATGGMTCAAG
-AANTCATGCGTGAA-
 G C T A A G T C G C T A G T A C A C G T A T C G C G T A C G A T A C T G C A T G G T A C C G A T A G T C C G T A C G T A C T A G
A C G T G T C A T C G A A G T C G A C T A T G C C T G A C G A T A T C G G A T C C T A G A C G T C T A G C G T A T C G A A C G T

PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer

Match Rank:2
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----WCACTGATGGMTCAAG
NGTGTTCAVTSAAGCGKAAA-
 A C G T A C G T A C G T A C G T A C G T G C T A A G T C G C T A G T A C A C G T A T C G C G T A C G A T A C T G C A T G G T A C C G A T A G T C C G T A C G T A C T A G
A G C T T A C G C G A T T C A G A G C T A C G T G A T C C T G A T A G C A G C T A T G C C T G A C G T A A T C G A G T C C T A G A C T G C T G A G T C A T C G A A C G T

PAX9/MA0781.1/Jaspar

Match Rank:3
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--WCACTGATGGMTCAAG
CGTCACGCATGACTGCA-
 A C G T A C G T G C T A A G T C G C T A G T A C A C G T A T C G C G T A C G A T A C T G C A T G G T A C C G A T A G T C C G T A C G T A C T A G
A T G C A C T G G C A T A G T C T G C A A G T C A C T G A T G C G C T A G A C T A T C G C T G A T A G C G A C T C A T G T G A C G T C A A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:4
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--WCACTGATGGMTCAAG
AGCCACTCAAG-------
 A C G T A C G T G C T A A G T C G C T A G T A C A C G T A T C G C G T A C G A T A C T G C A T G G T A C C G A T A G T C C G T A C G T A C T A G
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

DMRT3/MA0610.1/Jaspar

Match Rank:5
Score:0.50
Offset:5
Orientation:forward strand
Alignment:WCACTGATGGMTCAAG
-----AATGTATCAAT
 G C T A A G T C G C T A G T A C A C G T A T C G C G T A C G A T A C T G C A T G G T A C C G A T A G T C C G T A C G T A C T A G
A C G T A C G T A C G T A C G T A C G T G T C A C G T A C G A T A C T G A C G T C G T A C G A T A G T C G T C A C G T A A C G T

RHOXF1/MA0719.1/Jaspar

Match Rank:6
Score:0.49
Offset:7
Orientation:reverse strand
Alignment:WCACTGATGGMTCAAG
-------NGGATTAN-
 G C T A A G T C G C T A G T A C A C G T A T C G C G T A C G A T A C T G C A T G G T A C C G A T A G T C C G T A C G T A C T A G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G C T A G A C T G G T C A A C G T G A C T G C T A C G A T A C G T

PH0134.1_Pbx1/Jaspar

Match Rank:7
Score:0.49
Offset:-3
Orientation:reverse strand
Alignment:---WCACTGATGGMTCAAG
NNNNNATTGATGNGTGN--
 A C G T A C G T A C G T G C T A A G T C G C T A G T A C A C G T A T C G C G T A C G A T A C T G C A T G G T A C C G A T A G T C C G T A C G T A C T A G
A C G T A C T G G C A T C G A T C A G T G C T A C G A T A C G T A C T G C G T A G A C T A C T G C A T G C T A G G C A T T C A G C T G A A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:8
Score:0.49
Offset:-2
Orientation:reverse strand
Alignment:--WCACTGATGGMTCAAG
MRSCACTYAA--------
 A C G T A C G T G C T A A G T C G C T A G T A C A C G T A T C G C G T A C G A T A C T G C A T G G T A C C G A T A G T C C G T A C G T A C T A G
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer

Match Rank:9
Score:0.49
Offset:-5
Orientation:forward strand
Alignment:-----WCACTGATGGMTCAAG
ANTTMRCASBNNNGTGYKAAN
 A C G T A C G T A C G T A C G T A C G T G C T A A G T C G C T A G T A C A C G T A T C G C G T A C G A T A C T G C A T G G T A C C G A T A G T C C G T A C G T A C T A G
C G T A C G A T G A C T G A C T T G A C C T G A A T G C C T G A T A G C A G T C A C G T T C G A C A T G T A C G G A C T A T C G G A C T A C G T C T G A T C G A C G T A

PAX1/MA0779.1/Jaspar

Match Rank:10
Score:0.49
Offset:-2
Orientation:forward strand
Alignment:--WCACTGATGGMTCAAG
CGTCACGCATGACTGCA-
 A C G T A C G T G C T A A G T C G C T A G T A C A C G T A T C G C G T A C G A T A C T G C A T G G T A C C G A T A G T C C G T A C G T A C T A G
A T G C C A T G G C A T G A T C T G C A G A T C C A T G A T G C G C T A G A C T A T C G T C G A T A G C G A C T C A T G T G A C G T C A A C G T