Information for 2-MAAAGTYCAAAGTCYA (Motif 2)

G T A C G T C A T C G A C T G A C A T G C A G T A G T C T G A C C G T A T C G A C G T A C A T G C A G T A G T C G A T C G C T A
Reverse Opposite:
C A G T C T A G T C A G G T C A G T A C G C A T A G C T A C G T A C T G T C A G G T C A G T A C G A C T A G C T C A G T C A T G
p-value:1e-43
log p-value:-9.912e+01
Information Content per bp:1.546
Number of Target Sequences with motif105.0
Percentage of Target Sequences with motif12.87%
Number of Background Sequences with motif1131.6
Percentage of Background Sequences with motif2.39%
Average Position of motif in Targets49.7 +/- 22.6bp
Average Position of motif in Background51.4 +/- 30.2bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:1
Score:0.90
Offset:0
Orientation:forward strand
Alignment:MAAAGTYCAAAGTCYA
CANAGNNCAAAGTCCA
 G T A C G T C A T C G A C T G A C A T G C A G T A G T C T G A C C G T A T C G A C G T A C A T G C A G T A G T C G A T C G C T A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

HNF4G/MA0484.1/Jaspar

Match Rank:2
Score:0.89
Offset:1
Orientation:forward strand
Alignment:MAAAGTYCAAAGTCYA
-AGAGTCCAAAGTCCA
 G T A C G T C A T C G A C T G A C A T G C A G T A G T C T G A C C G T A T C G A C G T A C A T G C A G T A G T C G A T C G C T A
A C G T C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

Hnf4a/MA0114.3/Jaspar

Match Rank:3
Score:0.76
Offset:2
Orientation:forward strand
Alignment:MAAAGTYCAAAGTCYA--
--GGGGTCAAAGTCCAAT
 G T A C G T C A T C G A C T G A C A T G C A G T A G T C T G A C C G T A T C G A C G T A C A T G C A G T A G T C G A T C G C T A A C G T A C G T
A C G T A C G T T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

Tcf7/MA0769.1/Jaspar

Match Rank:4
Score:0.73
Offset:1
Orientation:forward strand
Alignment:MAAAGTYCAAAGTCYA
-AAAGATCAAAGG---
 G T A C G T C A T C G A C T G A C A T G C A G T A G T C T G A C C G T A T C G A C G T A C A T G C A G T A G T C G A T C G C T A
A C G T C T G A C T G A C G T A A T C G C G T A A C G T A T G C C G T A T C G A C G T A C T A G T C A G A C G T A C G T A C G T

NR1H2::RXRA/MA0115.1/Jaspar

Match Rank:5
Score:0.73
Offset:1
Orientation:forward strand
Alignment:MAAAGTYCAAAGTCYA--
-AAAGGTCAAAGGTCAAC
 G T A C G T C A T C G A C T G A C A T G C A G T A G T C T G A C C G T A T C G A C G T A C A T G C A G T A G T C G A T C G C T A A C G T A C G T
A C G T G T C A C T G A C T G A A C T G A C T G A C G T A G T C C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A C G T A A T G C

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:6
Score:0.73
Offset:2
Orientation:forward strand
Alignment:MAAAGTYCAAAGTCYA
--GAGGTCAAAGGTCA
 G T A C G T C A T C G A C T G A C A T G C A G T A G T C T G A C C G T A T C G A C G T A C A T G C A G T A G T C G A T C G C T A
A C G T A C G T T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A

PB0134.1_Hnf4a_2/Jaspar

Match Rank:7
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---MAAAGTYCAAAGTCYA
GGCAAAAGTCCAATAA---
 A C G T A C G T A C G T G T A C G T C A T C G A C T G A C A T G C A G T A G T C T G A C C G T A T C G A C G T A C A T G C A G T A G T C G A T C G C T A
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T A C G T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.72
Offset:0
Orientation:forward strand
Alignment:MAAAGTYCAAAGTCYA
CAAAGGTCAG------
 G T A C G T C A T C G A C T G A C A T G C A G T A G T C T G A C C G T A T C G A C G T A C A T G C A G T A G T C G A T C G C T A
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

LEF1/MA0768.1/Jaspar

Match Rank:9
Score:0.71
Offset:1
Orientation:forward strand
Alignment:MAAAGTYCAAAGTCYA
-AAAGATCAAAGGGTT
 G T A C G T C A T C G A C T G A C A T G C A G T A G T C T G A C C G T A T C G A C G T A C A T G C A G T A G T C G A T C G C T A
A C G T T C G A C T G A C T G A T A C G C G T A G C A T T A G C C G T A C T G A C T G A T C A G T C A G T C A G C G A T G C A T

Nr2f6/MA0677.1/Jaspar

Match Rank:10
Score:0.70
Offset:2
Orientation:forward strand
Alignment:MAAAGTYCAAAGTCYA
--GAGGTCAAAGGTCA
 G T A C G T C A T C G A C T G A C A T G C A G T A G T C T G A C C G T A T C G A C G T A C A T G C A G T A G T C G A T C G C T A
A C G T A C G T T C A G T C G A C A T G C A T G A C G T A G T C C G T A C T G A T C G A A C T G C A T G A C G T A G T C C T G A