Information for 19-GCTKCCACTCAMC (Motif 24)

A C T G A G T C A C G T C A T G A T G C A G T C C G T A A G T C A C G T T G A C C G T A G T A C A G T C
Reverse Opposite:
A C T G A C T G A C G T A C T G C G T A A C T G A C G T C T A G A T C G G T A C C G T A A C T G A G T C
p-value:1e-10
log p-value:-2.449e+01
Information Content per bp:1.911
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.85%
Number of Background Sequences with motif6.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets46.4 +/- 30.1bp
Average Position of motif in Background46.6 +/- 37.0bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:1
Score:0.74
Offset:0
Orientation:forward strand
Alignment:GCTKCCACTCAMC
SCTGTCAVTCAV-
 A C T G A G T C A C G T C A T G A T G C A G T C C G T A A G T C A C G T T G A C C G T A G T A C A G T C
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.74
Offset:0
Orientation:forward strand
Alignment:GCTKCCACTCAMC
NCTGTCAATCAN-
 A C T G A G T C A C G T C A T G A T G C A G T C C G T A A G T C A C G T T G A C C G T A G T A C A G T C
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:3
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-GCTKCCACTCAMC
GSCTGTCACTCA--
 A C G T A C T G A G T C A C G T C A T G A T G C A G T C C G T A A G T C A C G T T G A C C G T A G T A C A G T C
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:4
Score:0.68
Offset:2
Orientation:forward strand
Alignment:GCTKCCACTCAMC
--AGCCACTCAAG
 A C T G A G T C A C G T C A T G A T G C A G T C C G T A A G T C A C G T T G A C C G T A G T A C A G T C
A C G T A C G T C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:5
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:GCTKCCACTCAMC
---NSCACTYVAV
 A C T G A G T C A C G T C A T G A T G C A G T C C G T A A G T C A C G T T G A C C G T A G T A C A G T C
A C G T A C G T A C G T C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:6
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:GCTKCCACTCAMC
--MRSCACTYAA-
 A C T G A G T C A C G T C A T G A T G C A G T C C G T A A G T C A C G T T G A C C G T A G T A C A G T C
A C G T A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:7
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GCTKCCACTCAMC
--AASCACTCAA-
 A C T G A G T C A C G T C A T G A T G C A G T C C G T A A G T C A C G T T G A C C G T A G T A C A G T C
A C G T A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T

PB0114.1_Egr1_2/Jaspar

Match Rank:8
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GCTKCCACTCAMC-
NNAGTCCCACTCNNNN
 A C G T A C G T A C T G A G T C A C G T C A T G A T G C A G T C C G T A A G T C A C G T T G A C C G T A G T A C A G T C A C G T
T G A C G A T C C G T A C T A G G C A T G T A C G A T C G A T C G T C A A G T C A G C T G A T C T A G C C T A G T G A C T G C A

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:9
Score:0.61
Offset:3
Orientation:forward strand
Alignment:GCTKCCACTCAMC
---RSCACTYRAG
 A C T G A G T C A C G T C A T G A T G C A G T C C G T A A G T C A C G T T G A C C G T A G T A C A G T C
A C G T A C G T A C G T C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G

Nkx3-1/MA0124.2/Jaspar

Match Rank:10
Score:0.60
Offset:3
Orientation:forward strand
Alignment:GCTKCCACTCAMC
---ACCACTTAA-
 A C T G A G T C A C G T C A T G A T G C A G T C C G T A A G T C A C G T T G A C C G T A G T A C A G T C
A C G T A C G T A C G T T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A A C G T