Information for 15-ACCTAGTTAA (Motif 21)

C G T A A G T C G T A C A C G T C T G A C T A G A C G T C G A T C G T A G T C A
Reverse Opposite:
A C G T C G A T G C T A C G T A A G T C A G C T C G T A A C T G C T A G A C G T
p-value:1e-11
log p-value:-2.540e+01
Information Content per bp:1.855
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.46%
Number of Background Sequences with motif39.3
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets51.6 +/- 23.7bp
Average Position of motif in Background43.0 +/- 27.5bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0040.1_Hmbox1/Jaspar

Match Rank:1
Score:0.83
Offset:-3
Orientation:forward strand
Alignment:---ACCTAGTTAA----
GAAAACTAGTTAACATC
 A C G T A C G T A C G T C G T A A G T C G T A C A C G T C T G A C T A G A C G T C G A T C G T A G T C A A C G T A C G T A C G T A C G T
T C A G G C T A C T G A C T G A C G T A A G T C A C G T C T G A C T A G A C G T G C A T C G T A C G T A A G T C C G T A C G A T A T G C

HMBOX1/MA0895.1/Jaspar

Match Rank:2
Score:0.83
Offset:1
Orientation:forward strand
Alignment:ACCTAGTTAA-
-ACTAGTTAAC
 C G T A A G T C G T A C A C G T C T G A C T A G A C G T C G A T C G T A G T C A A C G T
A C G T T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C

PH0168.1_Hnf1b/Jaspar

Match Rank:3
Score:0.79
Offset:-2
Orientation:reverse strand
Alignment:--ACCTAGTTAA-----
ANNNCTAGTTAACNGNN
 A C G T A C G T C G T A A G T C G T A C A C G T C T G A C T A G A C G T C G A T C G T A G T C A A C G T A C G T A C G T A C G T A C G T
C T G A T A G C C T A G T C A G A G T C G C A T T C G A C T A G C A G T C G A T C G T A C G T A A G T C T G C A C T A G T G A C G C A T

LBX1/MA0618.1/Jaspar

Match Rank:4
Score:0.75
Offset:2
Orientation:reverse strand
Alignment:ACCTAGTTAA
--CTAATTAA
 C G T A A G T C G T A C A C G T C T G A C T A G A C G T C G A T C G T A G T C A
A C G T A C G T T A G C A G C T G C T A C T G A A C G T A C G T C T G A G C T A

RORA(var.2)/MA0072.1/Jaspar

Match Rank:5
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---ACCTAGTTAA-
TTGACCTANTTATN
 A C G T A C G T A C G T C G T A A G T C G T A C A C G T C T G A C T A G A C G T C G A T C G T A G T C A A C G T
A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

PB0081.1_Tcf1_1/Jaspar

Match Rank:6
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-ACCTAGTTAA------
NNNTTAGTTAACTNANN
 A C G T C G T A A G T C G T A C A C G T C T G A C T A G A C G T C G A T C G T A G T C A A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A G T G A C T A G C T G A C T C T G A T A C G G A C T C G A T C G T A C G T A A G T C A G C T C T G A T C G A C T A G A C G T

mix-a/MA0621.1/Jaspar

Match Rank:7
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:ACCTAGTTAA--
-NCTAATTAANN
 C G T A A G T C G T A C A C G T C T G A C T A G A C G T C G A T C G T A G T C A A C G T A C G T
A C G T G T C A G A T C A C G T C G T A C G T A A C G T A C G T C G T A C T G A G A C T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:8
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--ACCTAGTTAA
TGACCTARTT--
 A C G T A C G T C G T A A G T C G T A C A C G T C T G A C T A G A C G T C G A T C G T A G T C A
A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T A C G T A C G T

PB0159.1_Rfx4_2/Jaspar

Match Rank:9
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--ACCTAGTTAA---
TACCCTAGTTACCGA
 A C G T A C G T C G T A A G T C G T A C A C G T C T G A C T A G A C G T C G A T C G T A G T C A A C G T A C G T A C G T
G C A T G T C A A T G C A T G C G T A C C A G T T C G A A C T G C G A T A C G T C G T A A G T C T A G C T A C G G T C A

PH0143.1_Pou2f1/Jaspar

Match Rank:10
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-ACCTAGTTAA-----
TACTTAATTAATNNAN
 A C G T C G T A A G T C G T A C A C G T C T G A C T A G A C G T C G A T C G T A G T C A A C G T A C G T A C G T A C G T A C G T
G C A T C G T A T G A C G A C T C G A T G T C A C G T A C G A T A C G T C G T A C G T A G A C T C G T A G A C T C T G A G A C T