Information for 9-ATTGCCAGAGCAA (Motif 12)

C G T A G C A T A C G T A C T G G T A C A G T C G C T A T C A G C G T A C T A G G T A C T G C A T C G A
Reverse Opposite:
A G C T A C G T A C T G A G T C G C A T A G T C C G A T C T A G A C T G A G T C G T C A C G T A C G A T
p-value:1e-12
log p-value:-2.876e+01
Information Content per bp:1.710
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.23%
Number of Background Sequences with motif98.9
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets58.8 +/- 22.1bp
Average Position of motif in Background48.8 +/- 28.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.60
Offset:1
Orientation:forward strand
Alignment:ATTGCCAGAGCAA
-TTGCCAAG----
 C G T A G C A T A C G T A C T G G T A C A G T C G C T A T C A G C G T A C T A G G T A C T G C A T C G A
A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:ATTGCCAGAGCAA--
-TTGCCATGGCAACN
 C G T A G C A T A C G T A C T G G T A C A G T C G C T A T C A G C G T A C T A G G T A C T G C A T C G A A C G T A C G T
A C G T A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:ATTGCCAGAGCAA--
-TTGCCATGGCAACC
 C G T A G C A T A C G T A C T G G T A C A G T C G C T A T C A G C G T A C T A G G T A C T G C A T C G A A C G T A C G T
A C G T A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.57
Offset:0
Orientation:forward strand
Alignment:ATTGCCAGAGCAA
CGTGCCAAG----
 C G T A G C A T A C G T A C T G G T A C A G T C G C T A T C A G C G T A C T A G G T A C T G C A T C G A
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:5
Score:0.57
Offset:1
Orientation:forward strand
Alignment:ATTGCCAGAGCAA
-TTGACAGC----
 C G T A G C A T A C G T A C T G G T A C A G T C G C T A T C A G C G T A C T A G G T A C T G C A T C G A
A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:6
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:ATTGCCAGAGCAA
-ATGCCAGACN--
 C G T A G C A T A C G T A C T G G T A C A G T C G C T A T C A G C G T A C T A G G T A C T G C A T C G A
A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:7
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:ATTGCCAGAGCAA-
GTTGCCATGGNAAC
 C G T A G C A T A C G T A C T G G T A C A G T C G C T A T C A G C G T A C T A G G T A C T G C A T C G A A C G T
A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

NFIC/MA0161.1/Jaspar

Match Rank:8
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:ATTGCCAGAGCAA
--TGCCAA-----
 C G T A G C A T A C G T A C T G G T A C A G T C G C T A T C A G C G T A C T A G G T A C T G C A T C G A
A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.56
Offset:0
Orientation:forward strand
Alignment:ATTGCCAGAGCAA
GRTGMTRGAGCC-
 C G T A G C A T A C G T A C T G G T A C A G T C G C T A T C A G C G T A C T A G G T A C T G C A T C G A
A T C G T C G A G A C T A T C G T G A C A C G T C T A G A C T G C G T A A C T G A G T C G T A C A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----ATTGCCAGAGCAA
GTTAATGGCC-------
 A C G T A C G T A C G T A C G T C G T A G C A T A C G T A C T G G T A C A G T C G C T A T C A G C G T A C T A G G T A C T G C A T C G A
A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T