Information for 4-SAAAACAMASASMGAK (Motif 8)

A T G C C G T A C G T A C G T A C G T A A G T C C G T A T G A C C G T A A T C G C G T A T A C G G T C A A C T G C G T A C A G T
Reverse Opposite:
G T C A A C G T A G T C C A G T A T G C A C G T A T G C A C G T A C T G A C G T C T A G A C G T A C G T A C G T A C G T A T C G
p-value:1e-13
log p-value:-3.097e+01
Information Content per bp:1.845
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.74%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets41.3 +/- 23.1bp
Average Position of motif in Background59.2 +/- 9.6bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0121.1_Foxj3_2/Jaspar

Match Rank:1
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----SAAAACAMASASMGAK
AACACCAAAACAAAGGA----
 A C G T A C G T A C G T A C G T A C G T A T G C C G T A C G T A C G T A C G T A A G T C C G T A T G A C C G T A A T C G C G T A T A C G G T C A A C T G C G T A C A G T
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A A C G T A C G T A C G T A C G T

FOXP1/MA0481.1/Jaspar

Match Rank:2
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----SAAAACAMASASMGAK
CAAAAGTAAACAAAG------
 A C G T A C G T A C G T A C G T A C G T A T G C C G T A C G T A C G T A C G T A A G T C C G T A T G A C C G T A A T C G C G T A T A C G G T C A A C T G C G T A C A G T
G T A C G C T A C G T A T C G A C T G A T C A G G C A T C G T A C G T A C G T A T G A C C G T A T G C A C G T A T C A G A C G T A C G T A C G T A C G T A C G T A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:3
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--SAAAACAMASASMGAK
AGAAGAACAAAGGACTA-
 A C G T A C G T A T G C C G T A C G T A C G T A C G T A A G T C C G T A T G A C C G T A A T C G C G T A T A C G G T C A A C T G C G T A C A G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:4
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--SAAAACAMASASMGAK
ATAAGAACAAAGGACTA-
 A C G T A C G T A T G C C G T A C G T A C G T A C G T A A G T C C G T A T G A C C G T A A T C G C G T A T A C G G T C A A C T G C G T A C A G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A A C G T

PB0123.1_Foxl1_2/Jaspar

Match Rank:5
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----SAAAACAMASASMGAK
ATATCAAAACAAAACA----
 A C G T A C G T A C G T A C G T A T G C C G T A C G T A C G T A C G T A A G T C C G T A T G A C C G T A A T C G C G T A T A C G G T C A A C T G C G T A C A G T
G C T A C G A T C G T A C G A T G A T C G C T A G C T A G T C A C G T A A G T C C G T A C G T A G T C A C G T A G T A C G T C A A C G T A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:6
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:SAAAACAMASASMGAK
-AAAACAAAGG-----
 A T G C C G T A C G T A C G T A C G T A A G T C C G T A T G A C C G T A A T C G C G T A T A C G G T C A A C T G C G T A C A G T
A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---SAAAACAMASASMGAK
TGCCAAAATAAACANN---
 A C G T A C G T A C G T A T G C C G T A C G T A C G T A C G T A A G T C C G T A T G A C C G T A A T C G C G T A T A C G G T C A A C T G C G T A C A G T
C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A A C G T A C G T A C G T

RUNX1/MA0002.2/Jaspar

Match Rank:8
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:SAAAACAMASASMGAK
-AAACCACAGAN----
 A T G C C G T A C G T A C G T A C G T A A G T C C G T A T G A C C G T A A T C G C G T A T A C G G T C A A C T G C G T A C A G T
A C G T G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C A C G T A C G T A C G T A C G T

PB0016.1_Foxj1_1/Jaspar

Match Rank:9
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---SAAAACAMASASMGAK
AAAGTAAACAAAAATT---
 A C G T A C G T A C G T A T G C C G T A C G T A C G T A C G T A A G T C C G T A T G A C C G T A A T C G C G T A T A C G G T C A A C T G C G T A C A G T
G C T A C G A T G C T A C T A G G A C T G T C A G C T A C G T A G A T C C G T A G T C A C G T A G T C A C G T A C A G T C A G T A C G T A C G T A C G T

FOXP2/MA0593.1/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--SAAAACAMASASMGAK
AAGTAAACAAA-------
 A C G T A C G T A T G C C G T A C G T A C G T A C G T A A G T C C G T A T G A C C G T A A T C G C G T A T A C G G T C A A C T G C G T A C A G T
C T G A C G T A C T A G C G A T C G T A C G T A C G T A A G T C C G T A T C G A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T