Information for 4-TRAGCAAACA (Motif 4)

C G A T C T G A C G T A C T A G A G T C C G T A C G T A C G T A A G T C C G T A
Reverse Opposite:
C G A T C T A G A C G T A C G T A C G T C T A G G A T C C G A T A G C T C G T A
p-value:1e-19
log p-value:-4.512e+01
Information Content per bp:1.753
Number of Target Sequences with motif79.0
Percentage of Target Sequences with motif9.71%
Number of Background Sequences with motif1359.9
Percentage of Background Sequences with motif2.88%
Average Position of motif in Targets49.6 +/- 26.4bp
Average Position of motif in Background48.1 +/- 32.4bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:1
Score:0.91
Offset:0
Orientation:reverse strand
Alignment:TRAGCAAACA
WAAGTAAAYA
 C G A T C T G A C G T A C T A G A G T C C G T A C G T A C G T A A G T C C G T A
G C A T T C G A C T G A T C A G A G C T G T C A G T C A C T G A A G T C T G C A

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:2
Score:0.89
Offset:0
Orientation:forward strand
Alignment:TRAGCAAACA
AAAGTAAACA
 C G A T C T G A C G T A C T A G A G T C C G T A C G T A C G T A A G T C C G T A
G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.89
Offset:0
Orientation:forward strand
Alignment:TRAGCAAACA
AAAGTAAACA
 C G A T C T G A C G T A C T A G A G T C C G T A C G T A C G T A A G T C C G T A
G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A

MF0005.1_Forkhead_class/Jaspar

Match Rank:4
Score:0.87
Offset:1
Orientation:reverse strand
Alignment:TRAGCAAACA
-AAATAAACA
 C G A T C T G A C G T A C T A G A G T C C G T A C G T A C G T A A G T C C G T A
A C G T T C G A G T C A T C G A G A C T G T C A C T G A T C G A G A T C C G T A

FOXA1/MA0148.3/Jaspar

Match Rank:5
Score:0.87
Offset:-1
Orientation:reverse strand
Alignment:-TRAGCAAACA----
CAAAGTAAACANNNN
 A C G T C G A T C T G A C G T A C T A G A G T C C G T A C G T A C G T A A G T C C G T A A C G T A C G T A C G T A C G T
G T A C G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C G C T A C G A T T A C G T C A G C T G A

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:6
Score:0.86
Offset:-5
Orientation:forward strand
Alignment:-----TRAGCAAACA--
NNNVCTGWGYAAACASN
 A C G T A C G T A C G T A C G T A C G T C G A T C T G A C G T A C T A G A G T C C G T A C G T A C G T A A G T C C G T A A C G T A C G T
A T G C C T G A A T C G T A C G A G T C C G A T T C A G C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A T A C G C T G A

FOXC2/MA0846.1/Jaspar

Match Rank:7
Score:0.86
Offset:0
Orientation:forward strand
Alignment:TRAGCAAACA--
TAAGTAAACAAA
 C G A T C T G A C G T A C T A G A G T C C G T A C G T A C G T A A G T C C G T A A C G T A C G T
G C A T C T G A G C T A T C A G G A C T G T C A G T C A C T G A A G T C C T G A G C T A G C T A

Foxa2/MA0047.2/Jaspar

Match Rank:8
Score:0.84
Offset:-2
Orientation:reverse strand
Alignment:--TRAGCAAACA
NCTAAGTAAACA
 A C G T A C G T C G A T C T G A C G T A C T A G A G T C C G T A C G T A C G T A A G T C C G T A
T A G C G T A C G C A T T C G A C G T A C T A G A G C T G T C A T G C A C G T A A G T C C G T A

FOXC1/MA0032.2/Jaspar

Match Rank:9
Score:0.84
Offset:0
Orientation:forward strand
Alignment:TRAGCAAACA-
TATGTAAATAT
 C G A T C T G A C G T A C T A G A G T C C G T A C G T A C G T A A G T C C G T A A C G T
G C A T C T G A C G A T T C A G G C A T G T C A G T C A C T G A A G C T C T G A G C A T

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:10
Score:0.83
Offset:-2
Orientation:reverse strand
Alignment:--TRAGCAAACA---
NCWRWGTAAACANSV
 A C G T A C G T C G A T C T G A C G T A C T A G A G T C C G T A C G T A C G T A A G T C C G T A A C G T A C G T A C G T
T G A C G A T C G C A T C T G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C G T A A T C G T C A G