Information for 10-CTGGCAAGCCAAA (Motif 15)

A G T C C G A T A C T G A T C G A G T C C G T A C G T A A T C G A G T C A G T C C G T A C G T A C G T A
Reverse Opposite:
A C G T A C G T A C G T A C T G A C T G A T G C A C G T A C G T C T A G A T G C A G T C C G T A A C T G
p-value:1e-10
log p-value:-2.511e+01
Information Content per bp:1.939
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.61%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets56.8 +/- 21.7bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CTGGCAAGCCAAA
TTGCCAAG-----
 A G T C C G A T A C T G A T C G A G T C C G T A C G T A A T C G A G T C A G T C C G T A C G T A C G T A
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T A C G T

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:2
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CTGGCAAGCCAAA----
-TGCCAAAATAAACANN
 A G T C C G A T A C T G A T C G A G T C C G T A C G T A A T C G A G T C A G T C C G T A C G T A C G T A A C G T A C G T A C G T A C G T
A C G T C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.59
Offset:6
Orientation:reverse strand
Alignment:CTGGCAAGCCAAA
------TGCCAA-
 A G T C C G A T A C T G A T C G A G T C C G T A C G T A A T C G A G T C A G T C C G T A C G T A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.58
Offset:4
Orientation:forward strand
Alignment:CTGGCAAGCCAAA
----CGTGCCAAG
 A G T C C G A T A C T G A T C G A G T C C G T A C G T A A T C G A G T C A G T C C G T A C G T A C G T A
A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

MEIS2/MA0774.1/Jaspar

Match Rank:5
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CTGGCAAGCCAAA
GCTGTCAA------
 A C G T A G T C C G A T A C T G A T C G A G T C C G T A C G T A A T C G A G T C A G T C C G T A C G T A C G T A
A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T A C G T A C G T A C G T A C G T

IRF2/MA0051.1/Jaspar

Match Rank:6
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CTGGCAAGCCAAA-------
--GGAAAGCGAAACCAAAAC
 A G T C C G A T A C T G A T C G A G T C C G T A C G T A A T C G A G T C A G T C C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A T C G C T A G C G T A C G T A C G T A C T A G A G C T A C T G C G T A C G T A C G T A A T C G A G T C C T G A C G T A C G T A G C T A G T A C

IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer

Match Rank:7
Score:0.55
Offset:3
Orientation:forward strand
Alignment:CTGGCAAGCCAAA--
---GAAASYGAAASY
 A G T C C G A T A C T G A T C G A G T C C G T A C G T A A T C G A G T C A G T C C G T A C G T A C G T A A C G T A C G T
A C G T A C G T A C G T C T A G T C G A C T G A C G T A T A C G G A C T T C A G T C G A G T C A T G C A T A C G A G C T

PH0140.1_Pknox1/Jaspar

Match Rank:8
Score:0.54
Offset:-6
Orientation:forward strand
Alignment:------CTGGCAAGCCAAA
AAAGACCTGTCAATCC---
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G A T A C T G A T C G A G T C C G T A C G T A A T C G A G T C A G T C C G T A C G T A C G T A
C G T A C T G A T G C A A T C G C T G A A T G C T G A C A G C T C T A G G C A T A G T C C G T A G C T A G C A T T G A C T G A C A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:9
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CTGGCAAGCCAAA
GGTGCCAAGT----
 A C G T A G T C C G A T A C T G A T C G A G T C C G T A C G T A A T C G A G T C A G T C C G T A C G T A C G T A
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:10
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--CTGGCAAGCCAAA
VGCTGWCAVB-----
 A C G T A C G T A G T C C G A T A C T G A T C G A G T C C G T A C G T A A T C G A G T C A G T C C G T A C G T A C G T A
T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C A C G T A C G T A C G T A C G T A C G T